View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14688_low_8 (Length: 307)
Name: NF14688_low_8
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 18358028 - 18357747
Alignment:
| Q |
10 |
catcatcactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagactgcactatagatattgatgagttcaatgc |
109 |
Q |
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| T |
18358028 |
catcaccactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagattccactatagacgttgatgagttcaatgc |
18357929 |
T |
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| Q |
110 |
aatgaacacaagagcaagagcaacaagaacaaatactttgtgagaggaagccattgtagtattagaagaaaaagtttatatctctatctatgatgagttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| |||||| |
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| T |
18357928 |
aatgaacacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatttctatatatgacgagttt |
18357829 |
T |
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| Q |
210 |
ggattgttatggtaaaacttgcttagagtctattatatatagtagttagcaagggggagtatataattaataacggtgggtt |
291 |
Q |
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| T |
18357828 |
ggattgttatggtgaaacttacttagggttttatatatatagtagctaactagggagagtaaataattagtaacggtaggtt |
18357747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 18346200 - 18345975
Alignment:
| Q |
10 |
catcatcactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagactgcactatagatattgatgagttcaatgc |
109 |
Q |
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| T |
18346200 |
catcaccactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagattccactatagacgttgatgagttcaatgc |
18346101 |
T |
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| Q |
110 |
aatgaacacaagagcaagagcaacaagaacaaatactttgtgagaggaagccattgtagtattagaagaaaaagtttatatctctatctatgatgagttt |
209 |
Q |
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| T |
18346100 |
aatgaacacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatatctatatatgacgagttt |
18346001 |
T |
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| Q |
210 |
ggattgttatggtaaaacttgcttag |
235 |
Q |
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| T |
18346000 |
ggattgttatggtgaaagttacttag |
18345975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42005402 - 42005442
Alignment:
| Q |
16 |
cactcaccttcaatcttgcttcaaggctcatcaaattggaa |
56 |
Q |
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| T |
42005402 |
cactcaccttcaatcttgcttcaaggctcatcaagttggaa |
42005442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 42005501 - 42005541
Alignment:
| Q |
124 |
caagagcaacaagaacaaatactttgtgagaggaagccatt |
164 |
Q |
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| T |
42005501 |
caagagcaacaataataaaaactttgtgagaggaagccatt |
42005541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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