View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_high_12 (Length: 322)
Name: NF14689_high_12
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_high_12 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 46631977 - 46632297
Alignment:
| Q |
1 |
ctgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatccttggtgggaagctgatttataagaaagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
46631977 |
ctgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatttttggtggaaagctgatttataagaaagca |
46632076 |
T |
|
| Q |
101 |
atataccttcaaaggaatgtccttatacctaataagatctcaaacaggtgaataagaatgaggaaccaaattaacgagcaaataatatgttccacacaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46632077 |
atataccttcaaaggaatgtccttatacctaataagatccgaaacaggtgaataagaatgaggaaccaaattaacgagcaaataatatgtcccacacaat |
46632176 |
T |
|
| Q |
201 |
ataagcaacaaccggatctaaaatccactgccaatgatcatcactgttaacctggaaaattaacattgttaaattaaaccttacactcccctactaactt |
300 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
46632177 |
ataaccaacaaccggatctaaaatctactgccaatgatcatcactgttaacctgg-aaattaacattgttaagtaaaaccttacactcccctactaactt |
46632275 |
T |
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| Q |
301 |
ctcctcccacgcaaacaaccta |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
46632276 |
ctcctcccacgcaaacaaccta |
46632297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 28871684 - 28872009
Alignment:
| Q |
2 |
tgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatccttggtgggaagctgattt-----------a |
90 |
Q |
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|||||||||| ||||| |||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||| |||| |||| |
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| T |
28871684 |
tgtaacaccatgcccacttacacaaagttgagagtcttgattgaggatgcctcgtctaaataaattatccttggtggaaagccaatttctgagaagacac |
28871783 |
T |
|
| Q |
91 |
taagaaagca-atataccttcaaaggaatgtccttatacctaataagatctcaaacaggtgaataagaatgaggaaccaaattaacgagcaaataatatg |
189 |
Q |
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||||||| || ||||| ||||||||| |||| |||| | |||||||| | ||| | ||| |||||||||||||||||| || ||||| | ||| | |
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| T |
28871784 |
taagaaaacacatatatcttcaaagggatgt-tttatgtcaaataagatttgaaatggacgaaagagaatgaggaaccaaattgactagcaactgataag |
28871882 |
T |
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| Q |
190 |
ttcca--cacaatataagcaacaaccggatctaaaatccactgccaatgatcatcactgttaacctggaaaattaacattgttaaattaaaccttacact |
287 |
Q |
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|||| ||| |||| ||||||| | ||||||| |||| |||||||||||| |||||| ||||| ||||| |||||||||||| | || | |||||| |
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| T |
28871883 |
ctccaacgacagtatagccaacaactgaatctaaattccattgccaatgatcaccactgtgaacct-gaaaagtaacattgttaagtaaattcctacact |
28871981 |
T |
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| Q |
288 |
cccctactaacttctcctcccacgcaaa |
315 |
Q |
| |
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||||||| || | ||||||||||||||| |
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| T |
28871982 |
cccctaccaaatcctcctcccacgcaaa |
28872009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 48764033 - 48764069
Alignment:
| Q |
10 |
cacatccactcacacaaagctgagagtcttgattaag |
46 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
48764033 |
cacacccactcacacaaagttgagagtcttgattaag |
48764069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 322
Target Start/End: Original strand, 37039710 - 37039926
Alignment:
| Q |
107 |
cttcaaaggaatgtccttatacctaataagatctcaaacaggtgaataagaatgaggaaccaaattaacgagcaaataatatgttccac--acaatataa |
204 |
Q |
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||||||||||||||||||||| | |||||||||| ||||| |||||| |||||| |||||| | || || ||||| | ||| || |||| ||| ||| |
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| T |
37039710 |
cttcaaaggaatgtccttatatcaaataagatctaaaacacgtgaatgagaatggggaaccgagttgactagcaattgataagtaccactgacagaatag |
37039809 |
T |
|
| Q |
205 |
gcaacaaccggatctaaaatccactgccaatgatcatcactgttaacctggaaaattaacattgttaaattaaaccttacactcccctactaacttctcc |
304 |
Q |
| |
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|||||| | |||||| | || || |||||||||| |||| || | | ||||| |||||||||||||| || | ||||||||||||| |||| |||| |
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| T |
37039810 |
ccaacaatcagatctagattctacgaccaatgatcaccactattgaac-agaaaagtaacattgttaaataaagtcctacactcccctaccaactcctcc |
37039908 |
T |
|
| Q |
305 |
tcccacgcaaacaaccta |
322 |
Q |
| |
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|||||| ||||||||||| |
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| T |
37039909 |
tcccacacaaacaaccta |
37039926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 37039587 - 37039681
Alignment:
| Q |
2 |
tgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatccttggtgggaagctgatttataagaa |
96 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||| | ||| ||| ||||||||||||| | || ||| |||||| ||| |||| |
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| T |
37039587 |
tgtaacaccacacccactcacacaaagttgagagtcttgattaagaatgcctagtctaaataaattatccattgtaggatgctgatctatgagaa |
37039681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 15668052 - 15668010
Alignment:
| Q |
2 |
tgtaacaccacatccactcacacaaagctgagagtcttgatta |
44 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15668052 |
tgtaacaccacacccactcacacaaagctgagagtcttgatta |
15668010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 39529038 - 39529116
Alignment:
| Q |
103 |
ataccttcaaaggaatgtccttatacctaataagatctcaaacaggtgaataagaatgaggaaccaaattaacgagcaa |
181 |
Q |
| |
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||||||||| |||||||||||||| || |||||||||| |||| |||||||| |||| |||| |||||||| ||||| |
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| T |
39529038 |
ataccttcagaggaatgtccttatgccaaataagatctgaaacgagtgaataaaaatggggaataaaattaactagcaa |
39529116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 15667837 - 15667726
Alignment:
| Q |
206 |
caacaaccggatctaaaatccactgccaatgatcatcactgttaacctggaaaattaacattgttaaattaaaccttacactcccctactaacttctcct |
305 |
Q |
| |
|
|||||||||||||||| | || | |||||||||| |||||||||||| ||||| |||||||||||| | || || |||||| ||||| ||| |||| |
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| T |
15667837 |
caacaaccggatctaattttcatttccaatgatcaccactgttaacct-gaaaagtaacattgttaagtaaagccctacactaccctaacaacccttcct |
15667739 |
T |
|
| Q |
306 |
cccacgcaaacaa |
318 |
Q |
| |
|
||||| ||||||| |
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| T |
15667738 |
cccacacaaacaa |
15667726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 39528925 - 39528999
Alignment:
| Q |
2 |
tgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatccttggt |
76 |
Q |
| |
|
|||| ||||||| ||||||||| |||| ||||||| ||||||||||| |||| | |||||| ||||||||||| |
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| T |
39528925 |
tgtagcaccacacccactcacataaagttgagagtattgattaaggatgcctcacctaaataagttatccttggt |
39528999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 33428390 - 33428446
Alignment:
| Q |
232 |
caatgatcatcactgttaacctggaaaattaacattgttaaattaaaccttacactcc |
289 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| | |||| |||||||| |
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|
| T |
33428390 |
caatgatcatcactgttaacct-gtaaattaacattgttaagtaaaacactacactcc |
33428446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 28448891 - 28448811
Alignment:
| Q |
2 |
tgtaacaccacatccactcacacaaagctgagagtcttgattaaggacacctcgtccaaataaattatccttggtgggaag |
82 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| |||||| |||||||| |||||| |||||||||||| ||||| ||||| |
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|
| T |
28448891 |
tgtaacaatacacccactcacacaatgctgaaagtcttcattaaggatgtctcgtctaaataaattatctttggtaggaag |
28448811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27085196 - 27085154
Alignment:
| Q |
7 |
caccacatccactcacacaaagctgagagtcttgattaaggac |
49 |
Q |
| |
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||||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
27085196 |
caccacacccgctcacacaaagttgagagtcttgattaaggac |
27085154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 48587044 - 48587082
Alignment:
| Q |
7 |
caccacatccactcacacaaagctgagagtcttgattaa |
45 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
48587044 |
caccacacccactcacacaaagccgagagtcttgattaa |
48587082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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