View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_high_20 (Length: 245)
Name: NF14689_high_20
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 5985394 - 5985293
Alignment:
| Q |
14 |
catagggacagccaaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaattaataattattttttcgttaatta |
113 |
Q |
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| T |
5985394 |
cataaggacagccaaaatcttgtcggttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaattaataattattttttcgttagtta |
5985295 |
T |
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| Q |
114 |
at |
115 |
Q |
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|| |
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| T |
5985294 |
at |
5985293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 5985278 - 5985203
Alignment:
| Q |
158 |
taagggaaagataagtatattagaactctgataccattacaaacaataaaagtaaaaccatactataaagaaaaat |
233 |
Q |
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| T |
5985278 |
taagggaaagataagtatattagaactctgataccattacaaaaaataaaagtaaaaccatactataaagaaaaat |
5985203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 5965085 - 5965010
Alignment:
| Q |
14 |
catagggacagccaaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
89 |
Q |
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| T |
5965085 |
cataaggacagacataatcttgtcttttttagttgctatgttgtatcgatccctgtaggaaaagaaaatgcttaat |
5965010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 5969267 - 5969218
Alignment:
| Q |
40 |
ttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
89 |
Q |
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| T |
5969267 |
ttttagttgctatgttgtatcgatccctacaggaaaagaaaatgcttaat |
5969218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 8714880 - 8714929
Alignment:
| Q |
40 |
ttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
89 |
Q |
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| T |
8714880 |
ttttagttgctatgttgtatcgatccctacaggaaaagaaaatgcttaat |
8714929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 5935890 - 5935829
Alignment:
| Q |
26 |
caaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgctta |
87 |
Q |
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|||||||||||| |||| ||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
5935890 |
caaaatcttgtccgttttggttgctatgttgtgtcgatccctgtaagaaaagaaaaggctta |
5935829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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