View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14689_high_3 (Length: 451)
Name: NF14689_high_3
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 2108813 - 2109254
Alignment:
| Q |
16 |
caacaacaatacatgtcacatataaaaatatatttgactccccttaaaaa-taatttacttgatctcaaaataaatagataaaacaaaaaagaagctaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2108813 |
caacaacaatacatgtcacatataaaaatatatttgactccccttaaaaaataatttacttgatctcaaaataaatagataaaacaaaaaagaagctact |
2108912 |
T |
|
| Q |
115 |
ttaaccagatttgtaaataaacagaagggttaaataagtttttagttcttattataaatataacgaattttatagggatcaaaacataacagnnnnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2108913 |
ttaaccagatttgtaaataaacagatgagttaaataagtttttagttcttattataaatataacgaattttatagggatcaaaacatgtcagttttttt- |
2109011 |
T |
|
| Q |
215 |
atgaggactaaaacgaaattgattatatttatagaacaaggagaaccgggagaacaaaaatacagtgcagggtttca-atgtgagccacggtcacctcac |
313 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2109012 |
ataaggactaaaacgaaattgattatatttatagaacaagcagaaccgggagaacaaaaatacagtgcagggtttcatatgtgagccacggtcacctcac |
2109111 |
T |
|
| Q |
314 |
tgtgaatagtaattataaggtcc----aataaataaatatgtaagcacattaatgaacaatgattaaacaagtttaac-aatctggaagcattttgcaca |
408 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2109112 |
tgggaatagtaattataaggcccaataaataaataaatatgtaaacacattaatgaacaatgattaaacaagtttaacaaatctggaagcattttgcaca |
2109211 |
T |
|
| Q |
409 |
agcacgtgtaagaggataatattaaaatgacaaaccaatagat |
451 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2109212 |
agcacgtgcaagaggataatattaaaatgacaaaccaatagat |
2109254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University