View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14689_low_1 (Length: 554)

Name: NF14689_low_1
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14689_low_1
NF14689_low_1
[»] chr8 (17 HSPs)
chr8 (46-455)||(4925515-4925924)
chr8 (19-152)||(4777134-4777267)
chr8 (42-150)||(4688421-4688529)
chr8 (42-150)||(4725685-4725793)
chr8 (46-160)||(10446175-10446289)
chr8 (46-150)||(4904976-4905080)
chr8 (46-150)||(4702921-4703025)
chr8 (42-152)||(4714253-4714363)
chr8 (46-146)||(4680791-4680891)
chr8 (20-150)||(4890934-4891064)
chr8 (46-150)||(4745160-4745264)
chr8 (42-150)||(4995714-4995822)
chr8 (46-144)||(4914097-4914195)
chr8 (46-138)||(21440157-21440249)
chr8 (60-149)||(4736178-4736267)
chr8 (46-150)||(4875927-4876031)
chr8 (182-243)||(4914001-4914062)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 46 - 455
Target Start/End: Complemental strand, 4925924 - 4925515
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  4925924 gagatcatttacattccatcaaaagattacatacaaccatgtcttgttaaaacaggcaaagggactccattcatttcaactatagaattgaggactttgg 4925825  T
Q  146 acaatgattcttatatctcagactcggtaaaaccagtagtgttatcactcttccggagatatgatttaggttccatcacaaatagagaatacaggtaaca 245  Q
     ||||||||||||||||  ||||||   |||||||||| | ||||||| ||||  |||||||||||||||||||||||||||   |||||||||||||||    
T  4925824 gcaatgattcttatatcggagactcaaaaaaaccagtaatattatcacacttcatgagatatgatttaggttccatcacaaacttagaatacaggtaaca 4925725  T
Q  246 ata--tatacattgcatagactgagctatagtaatacattatatttgaataatctcaccaataattcaaatcatagtgaaagcttataccgaaaatgttg 343  Q
    |||  ||||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  4925724 atatatatacattggatagactcagctgtagtaacacattatatttgaatgatctcaccaataattcaagtcatagtgaaagcttttaccaaaaatgttg 4925625  T
Q  344 ccattaccctagc-acacagtaaaccataagcaatcaaaaaacaagtgtgtcgagtagtttcttcgacctcacaaccaccagcacaaaaataagaattga 442  Q
    ||| ||||||||| || ||  |||| | || |||||||||||||||||||  ||||| ||||||| |||||||||||||  ||||||||||||||| |||    
T  4925624 ccaataccctagcaactcaaaaaacaagaa-caatcaaaaaacaagtgtg--gagtattttcttcaacctcacaaccacaggcacaaaaataagaactga 4925528  T
Q  443 aatttatcattca 455  Q
    |||||||||||||    
T  4925527 aatttatcattca 4925515  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4777267 - 4777134
Alignment:
Q  19 cccaatgcatcacgcataagattcagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattca 118  Q
    |||||||||||||| || ||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  4777267 cccaatgcatcacgtatgagattcaatgagatcatttacagtccatcacaagattacatacaaccatgtcttgttaacacaggccaagggactccattca 4777168  T
Q  119 tttcagctatagaattgaggactttggacaatga 152  Q
    |||| ||||||||||||||| ||||| |||||||    
T  4777167 tttcggctatagaattgaggcctttgaacaatga 4777134  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 4688421 - 4688529
Alignment:
Q  42 cagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggact 141  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  4688421 cagtgagatcatttacactccatcacaagattacatacaaccatgtcttgttaacacaggcaacgggactccattcatttcatctatagaattgaggact 4688520  T
Q  142 ttggacaat 150  Q
    ||| |||||    
T  4688521 ttgaacaat 4688529  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 4725685 - 4725793
Alignment:
Q  42 cagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggact 141  Q
    ||||||||||||||||  |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  4725685 cagtgagatcatttacactccatcactagattacatacaaccatgtcttgttaacacagacaaagggactccattcatttcagctatagaattgaggact 4725784  T
Q  142 ttggacaat 150  Q
    ||| |||||    
T  4725785 ttgaacaat 4725793  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 10446175 - 10446289
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    |||||||| |||  ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     
T  10446175 gagatcatatacactccatcacaagattacatacaaccatgtcttgttaacacaggcaaagggattccattcatttcagctatagaattgaggactttga 10446274  T
Q  146 acaatgattcttata 160  Q
    ||||| || ||||||    
T  10446275 acaataatacttata 10446289  T

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Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 4905080 - 4904976
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||     
T  4905080 gagatcatttacactccatcacaagattacatacaaccatgtcttgttaacacaggcaaagggactccattcatttcagccatagaattgaggcctttga 4904981  T
Q  146 acaat 150  Q
    |||||    
T  4904980 acaat 4904976  T

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Target: chr8; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 4702921 - 4703025
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    ||||||||||||  |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||     
T  4702921 gagatcatttacactccatcactagattacatacaaccatgtcttgttaacacaggcaaagggactccattcatttcagttattgaattgaggactttga 4703020  T
Q  146 acaat 150  Q
    |||||    
T  4703021 acaat 4703025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 4714253 - 4714363
Alignment:
Q  42 cagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggact 141  Q
    |||||||||||| |||  ||||| |  |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  4714253 cagtgagatcatatacactccattattagattacatacaaccatgtcttgttaacacaggaaaagggactccattcatttcagttatagaattgaggact 4714352  T
Q  142 ttggacaatga 152  Q
    ||| |||||||    
T  4714353 ttgaacaatga 4714363  T

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Target: chr8; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 4680791 - 4680891
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    |||||||| |||  |||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||    
T  4680791 gagatcatatacactccatcactagattacatacaaccatgtcttgttaacacaggcaaagggactccgttcatttcagccatagaattgaggactttgg 4680890  T
Q  146 a 146  Q
    |    
T  4680891 a 4680891  T

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Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 4891064 - 4890934
Alignment:
Q  20 ccaatgcatcacgcataagattcagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcat 119  Q
    |||||||||||| | | | |||||| || |||||||||  ||| ||   |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  4891064 ccaatgcatcactcttcacattcagggaaatcatttacactccgtcgctagattacatacaaccatgtcttgttaacacaggaaaagggactccattcat 4890965  T
Q  120 ttcagctatagaattgaggactttggacaat 150  Q
    ||||||||||||||||||| ||||| |||||    
T  4890964 ttcagctatagaattgaggcctttgaacaat 4890934  T

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Target: chr8; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 4745160 - 4745264
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    ||||||||||||  |||||||  |||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||| ||||     
T  4745160 gagatcatttacactccatcactagattacatacaaccatgtcttgttaacacaggcagcaggactccattcatttcagctatagaattgaggagtttga 4745259  T
Q  146 acaat 150  Q
    |||||    
T  4745260 acaat 4745264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 4995714 - 4995822
Alignment:
Q  42 cagtgagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggact 141  Q
    |||||||||||| |||  |||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||    
T  4995714 cagtgagatcatatacactccatcactagattacattcaaccatgtcttgttaacacaggcaaagggactccattcatttctgctattgaattgaggcct 4995813  T
Q  142 ttggacaat 150  Q
    ||| |||||    
T  4995814 ttgaacaat 4995822  T

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Target: chr8; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 4914195 - 4914097
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttg 144  Q
    |||||||| |||  ||||||| ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||||||    
T  4914195 gagatcatatacactccatcacaagatcacatacaaccatgtcttgttaacataggcaaagggactccattcatttcagttttagaattgaggactttg 4914097  T

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Target: chr8; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 21440249 - 21440157
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgagg 138  Q
    ||||| ||||||  |||||||  |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  21440249 gagattatttacactccatcagtagattacataaaaccatgtcttgttaacacaggcaaagggactccattcatttcagccatagaattgagg 21440157  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 4736178 - 4736267
Alignment:
Q  60 tccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttggacaa 149  Q
    ||||||| |||||||||||||||||||| |||||||||| || || || |||||||||||||||| ||||||||||||||||||| ||||    
T  4736178 tccatcacaagattacatacaaccatgttttgttaacacaggaaacggaactccattcatttcagttatagaattgaggactttgaacaa 4736267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 4876031 - 4875927
Alignment:
Q  46 gagatcatttactttccatcaaaagattacatacaaccatgtcttgttaacactggcaaagggactccattcatttcagctatagaattgaggactttgg 145  Q
    |||||||| |||  |||||||  ||| |||||| |||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||     
T  4876031 gagatcatatacactccatcactagactacatagaaccatgtcttgttaacactggaaatggaactccattcatttcagttatagaattgaggactttga 4875932  T
Q  146 acaat 150  Q
    |||||    
T  4875931 acaat 4875927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 4914062 - 4914001
Alignment:
Q  182 tagtgttatcactcttccggagatatgatttaggttccatcacaaatagagaatacaggtaa 243  Q
    |||| |||||||| |||  | ||| ||||||||||||||||||||| |||||||||||||||    
T  4914062 tagtattatcacttttcaagcgatgtgatttaggttccatcacaaacagagaatacaggtaa 4914001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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