View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14689_low_10 (Length: 351)
Name: NF14689_low_10
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 8259476 - 8259145
Alignment:
| Q |
1 |
caaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259476 |
caaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatgg |
8259377 |
T |
|
| Q |
101 |
tggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259376 |
tggagggtagcgtgagggggagcattgtgtgcacaggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagt |
8259277 |
T |
|
| Q |
201 |
gttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259276 |
gttggggctaatgcgtgcggccagtgtgcaactggccacacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaag |
8259177 |
T |
|
| Q |
301 |
ttgttggggatgagcgaagagaaagcacaagc |
332 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
8259176 |
ttgtcggggatgagcgaagagaaagcacaagc |
8259145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 8308935 - 8308605
Alignment:
| Q |
1 |
caaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatgg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
8308935 |
caaacaataatggaacttgatatgtcccaacttgaccgtttatttgccgtcaatgtccgtggaatgtcgttgtgtgtgaaacacgcggcgcgtgcaatgg |
8308836 |
T |
|
| Q |
101 |
tggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagt |
200 |
Q |
| |
|
| ||||||| ||| ||||||||||| ||||| || || |||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8308835 |
tagagggtcacgtaagggggagcatagtgtgtacagggagtgttggcggtagccggggaggctcgaggtcaacggattacacgatgtcaaagcatgcagt |
8308736 |
T |
|
| Q |
201 |
gttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaag |
300 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||||| |
|
|
| T |
8308735 |
attggggctaatgcgtgcggccagcgtacaactagccgcacacgggataagagtgaactctgtctcgccgaatgggttggcaacacctttgacttgtaag |
8308636 |
T |
|
| Q |
301 |
ttgttggggatgagcgaagagaaagcacaag |
331 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||| |
|
|
| T |
8308635 |
ttgttgggaatgagcaatgaggaagcacaag |
8308605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 8257168 - 8256845
Alignment:
| Q |
1 |
caaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatgg |
100 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||| || || |||||||||| |
|
|
| T |
8257168 |
caaacaatcatggaacttgacatgtcccaatttgaccgtttatttgcggtcaatgttcaaggaatggcgttgtgtgtgaaacatgcagcacgtgcaatgg |
8257069 |
T |
|
| Q |
101 |
tggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagt |
200 |
Q |
| |
|
||||||||||| | |||||||| || || ||||| || ||||||||| || | |||| || | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8257068 |
tggagggtcgcataagggggagtatcgtatgcacagggagtgttagctgtcgtcaaggaggccccaggtcaacggactacacaatgtcaaagcatgcagt |
8256969 |
T |
|
| Q |
201 |
gttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaag |
300 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| | |||||| || ||||| |||||||||||| |
|
|
| T |
8256968 |
gttgggactaatgcgtgcggctagtgtgcaactggccgcacatggaatacgagtcaactgtgtttcgccgagtggactggcgacacctttgacttgtaag |
8256869 |
T |
|
| Q |
301 |
ttgttggggatgagcgaagagaaa |
324 |
Q |
| |
|
| |||||||||||||| |||||| |
|
|
| T |
8256868 |
cttttggggatgagcgaggagaaa |
8256845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 8289857 - 8289580
Alignment:
| Q |
22 |
atgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgaggggga |
121 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||| || || | ||| ||||||||||| ||| | ||||||| |
|
|
| T |
8289857 |
atgtcccaactagaccgtttattcacaatcaatgttcgaggaatggcattgtgtgtgaaacatgccgcacatgctatggtggaggggcgcattaggggga |
8289758 |
T |
|
| Q |
122 |
gcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggc |
221 |
Q |
| |
|
| |||||||||||||| |||||| | |||| ||| | |||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || |
|
|
| T |
8289757 |
gtattgtgtgcacggggagtgttcacagtagtcatggattcctgaggtcaacggattacacgatgtcaaagcacgcagtattagggctaatgcgtgcagc |
8289658 |
T |
|
| Q |
222 |
cagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaa |
299 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||| |
|
|
| T |
8289657 |
cagtgtgcaactggctgcacacggaataagagtgaactgtgtctcaccgaatggactagcgacacctttgacttgtaa |
8289580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 8261997 - 8261771
Alignment:
| Q |
68 |
cattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgag |
167 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| | || || |||||| ||| || ||| |
|
|
| T |
8261997 |
cattgtgtgtgaaatacgcggcacgtgcgatggtggaggggcgcgtgaggggtagcattgtgtgcacagcgagcgtattgggtagccaaggtgtcttgag |
8261898 |
T |
|
| Q |
168 |
gtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcg |
267 |
Q |
| |
|
|| ||| ||||||||||| || ||||||||| | | ||| | ||||| | || ||||||||||| || | ||||||||||||| || ||||| ||| |
|
|
| T |
8261897 |
gttaaccgattacacaatatcgaagcatgcaataatagggttgatgcgctcagcgagtgtgcaacttgcaaaatacgggataagagtgaattgtgtctcg |
8261798 |
T |
|
| Q |
268 |
ccaaatggactagcaacaccattgact |
294 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
8261797 |
ccaaatggattagcaacaccattgact |
8261771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 8325002 - 8324923
Alignment:
| Q |
55 |
gttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcac |
134 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| ||||| |||||||| || |||||||||| |||||||||||||| |
|
|
| T |
8325002 |
gttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgtgaggggtagcattgtgtgcac |
8324923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University