View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_14 (Length: 316)
Name: NF14689_low_14
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 49897166 - 49896864
Alignment:
| Q |
3 |
aaatgaacctctttgtaagcaagttgagtctttgttgcgttgcgtttgatttcaccgattctggtaagaacattgtggagaaagatgtaaagagaagaac |
102 |
Q |
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| T |
49897166 |
aaatgaacctctttgtaagcaagttgagtctttgttgcgttgcgtttgatttcaccgattctggtaagaacgttgtggagaaagatgtaaagagaagaac |
49897067 |
T |
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| Q |
103 |
gttggttgaacttgttgattttgtttcttcttttgggtctgcaaagtttagtgagccagctattcttgcaatgtgtagaatgtgtgctatcaatctcttt |
202 |
Q |
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| T |
49897066 |
attggttgaacttgttgattttgtttcttcttttgggtctgcaaagtttagtgagccagctattcttgcaatgtgtaggatgtgtgctatcaatctcttt |
49896967 |
T |
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| Q |
203 |
cgcattttcccgccacattatagggctcataatcgaattggtggcggtgagaatgatgatgatgaaccagcttttgatcctgcttggcctcatcttcaac |
302 |
Q |
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| T |
49896966 |
cgcgttttcccgccacattatagggctcataatcgaattggtggcggtgagaatgatgatgatgaaccagcttttgatcctgcttggcctcatcttcaac |
49896867 |
T |
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| Q |
303 |
ttg |
305 |
Q |
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| T |
49896866 |
ttg |
49896864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 2030264 - 2030448
Alignment:
| Q |
5 |
atgaacctctttgtaagcaagttgagtctttgttgcgttgcgtttgatttcaccgattctggtaagaacattgtggagaaagatgtaaagagaagaacgt |
104 |
Q |
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|||||| | ||||| ||||| ||||| |||||||| || | ||||||||||| ||| |||||||||| ||| ||||||||||| || || | ||| | |
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| T |
2030264 |
atgaacttgtttgtgagcaaattgagcctttgttgtgtgacatttgatttcactgatcctggtaagaatgttgctgagaaagatgtgaaaaggaaaactt |
2030363 |
T |
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| Q |
105 |
tggttgaacttgttgattttgtttcttcttttgggtctgcaaagtttagtgagccagctattcttgcaatgtgtagaatgtgtgctat |
192 |
Q |
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| T |
2030364 |
tggttgaacttgttgattttgt---ggcttgtggatcaatgaagtttagtgaacctgctattcttgcaatgtgtagaatgtgtgctat |
2030448 |
T |
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