View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_2 (Length: 453)
Name: NF14689_low_2
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 43503251 - 43503691
Alignment:
| Q |
13 |
tcagttacatttccaggaacgttcttcaacatggagagacttcgtgttagccaaccactctgtccttgttcttccgattcatgtgtctttttcctctctt |
112 |
Q |
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| T |
43503251 |
tcagttacatttccaggaacgttcttcaacatggagagacttcttgttagccaaccactctgtccttgttcttccgattcatgtgtctttttcctctctt |
43503350 |
T |
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| Q |
113 |
cctctgccaatatgtcaatccacctcttggccatgtaagacttgatggcttggacaccttcatttacagtctccataggtggcaattcaatagggttctg |
212 |
Q |
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| T |
43503351 |
cctctgccaatatatcaatccacctcttggccatgtaagacttgatggcttggacaccttcatttacaatctccataggtggcaattcaatagggttctg |
43503450 |
T |
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| Q |
213 |
ctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttgattgttgctaagatccaattccttgaggctactcaga |
312 |
Q |
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| T |
43503451 |
ctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttgattgttgctaagatccaattccttgaggctactcaaa |
43503550 |
T |
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| Q |
313 |
tcaccaaatgtcgctggtatttcttgaagatcgctgaagttacgacgcaggtttagaaattcaagactagtcaatttcccgattgcaataggaagcccat |
412 |
Q |
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| T |
43503551 |
tcaccaaatgtctctggtatttcttgaagatcgctgaagttactactcaggtttagaaattcaagactagtcaatttcccgattgcaataggaagcccat |
43503650 |
T |
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| Q |
413 |
gtagttcattaaagtgcgcatctagatagcgcagtgacttc |
453 |
Q |
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| T |
43503651 |
gtagttcattaaagtgcgcatctagatagcgcagtgacttc |
43503691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 344
Target Start/End: Original strand, 34564231 - 34564466
Alignment:
| Q |
109 |
tcttcctctgccaatatgtcaatccacctcttggccatgtaagacttgatggcttggacaccttcatttacagtctccataggtggcaattcaatagggt |
208 |
Q |
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| T |
34564231 |
tcttcctcttccaacatagcaatccacctcttggccataaaagtttttatggcttggaccccttggtttacaatctccactggtggcagttcaagaggat |
34564330 |
T |
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| Q |
209 |
tctgctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttgattgttgctaagatccaattccttgaggctact |
308 |
Q |
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| T |
34564331 |
tctgttccaagttgagcttggtcaaattatcaaggcaaccaaatgtatctggaagtgcatgaatctgattattactgacatccaattccttgagattagt |
34564430 |
T |
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| Q |
309 |
cagatcaccaaatgtcgctggtatttcttgaagatc |
344 |
Q |
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| T |
34564431 |
caattcgccaaatgtctctggaagttctttaagatc |
34564466 |
T |
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