View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_22 (Length: 230)
Name: NF14689_low_22
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_22 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9997211 - 9997440
Alignment:
| Q |
1 |
tagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggaccacaatgttgcccggcttttgccaatatttgacaatatcgttcaacctta |
100 |
Q |
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| T |
9997211 |
tagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggaccacaatgttgcgccgcttttgccaatatttgacaatatcattcaacctta |
9997310 |
T |
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| Q |
101 |
tgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactg |
200 |
Q |
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| T |
9997311 |
tgacatatgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactg |
9997410 |
T |
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| Q |
201 |
agatcattccaggacttcaaggtgacctcc |
230 |
Q |
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| T |
9997411 |
agatcattccaggacttcaaggtgacctcc |
9997440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10003076 - 10003305
Alignment:
| Q |
1 |
tagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggacca-caatgttgcccggcttttgccaatatttgacaatatcgttcaacctt |
99 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||| || | | | | ||||||| | |||||||| ||||||||||||||| ||||||||| |
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| T |
10003076 |
tagtgtgttgcacaacaatagcgatttgttcaaattttgcta-tacgcagtagcgatgttgcgccgcttttgcaaatatttgacaatattgttcaaccta |
10003174 |
T |
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| Q |
100 |
atgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgact |
199 |
Q |
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| T |
10003175 |
atgacatatgtgtttgaatttataggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaaattgtccaagctatgact |
10003274 |
T |
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| Q |
200 |
gagatcattccaggacttcaaggtgacctcc |
230 |
Q |
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| T |
10003275 |
gagttaattccaggattacaaggtgacctcc |
10003305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 10012010 - 10012167
Alignment:
| Q |
71 |
gccaatatttgacaatatcgttcaaccttatgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtg |
170 |
Q |
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| T |
10012010 |
gccactatttgacaatattgttctaccatatgacatatgtttttgtatatataggtttgtagagatccaagatggggtagatgttacgaaagttacagtg |
10012109 |
T |
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| Q |
171 |
aagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgacct |
228 |
Q |
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| T |
10012110 |
aagatcataaaatagtccaatctatgactgagttaattccgggactgcaaggcgacct |
10012167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 9990530 - 9990635
Alignment:
| Q |
123 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaagg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||| ||| | |||||||| || ||||| |
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| T |
9990530 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagcgaagatcataaaatagtccaatctatgaccgagttaattccagggctgcaagg |
9990629 |
T |
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| Q |
223 |
tgacct |
228 |
Q |
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| T |
9990630 |
tgacct |
9990635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 33356365 - 33356274
Alignment:
| Q |
123 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccagga |
214 |
Q |
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| T |
33356365 |
aggtttgtagagatccaagatggggtcggtgttacgaaagctacagtgaagatcctaaagtagttcaagctatgactgaaatcataccagga |
33356274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 33348363 - 33348264
Alignment:
| Q |
123 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaagg |
222 |
Q |
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| T |
33348363 |
aggtctgtagaaatccgagatggggtaggtgttatgaaagctacagtcaagatcctaaaatagttcaagctatgactgaaatcatatcaggactgcaagg |
33348264 |
T |
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