View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_23 (Length: 227)
Name: NF14689_low_23
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40804506 - 40804714
Alignment:
| Q |
1 |
acaaactatacccctaaagtaaccatagtacaaattggcagatcaaaatttatgtaacatgaagaagtgagacacactaacaaaaagaaagaatccaaaa |
100 |
Q |
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| T |
40804506 |
acaaactatacccctaaagtaaccttagtacaaattggcagatcaaaatttatgtaacatgaagaagtgagacgcactaacaaaaagaaagaatccaaaa |
40804605 |
T |
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| Q |
101 |
agtatcttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804606 |
agtatcttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaa |
40804705 |
T |
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| Q |
201 |
aatctttcc |
209 |
Q |
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||||||||| |
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| T |
40804706 |
aatctttcc |
40804714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 4640877 - 4640775
Alignment:
| Q |
107 |
ttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctt |
206 |
Q |
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||||||||||||||||| | ||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| | |||||||| || ||||||| |
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| T |
4640877 |
ttaccattatagtccatagattcaagctttgttcttatttcagaagcagaattgttgtctccttcaaggagaagaaccctaagtccttttgggaaatctt |
4640778 |
T |
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| Q |
207 |
tcc |
209 |
Q |
| |
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||| |
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| T |
4640777 |
tcc |
4640775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 14803217 - 14803346
Alignment:
| Q |
84 |
aaagaaagaatccaaaaagtatcttaccattatagtccatggcctca-----agctttactcttatttcagaaacagaagtgttgtctccctcaaggaga |
178 |
Q |
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|||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||| ||| ||| ||| | |||||||||| |||| ||||||||| |
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| T |
14803217 |
aaagaaagaaaccaaaaagtctcttaccattacagtccattgcctcgcctcgagcttg-ctcgtatctcaacagcagaagtgttatctctttcaaggaga |
14803315 |
T |
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| Q |
179 |
agaaccttgagtcctttgggaaaatctttcc |
209 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14803316 |
agaaccttgagtcctttgggaaaatctttcc |
14803346 |
T |
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