View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_27 (Length: 202)
Name: NF14689_low_27
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 45402928 - 45403094
Alignment:
| Q |
13 |
aagcaaaggcaacaaacccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcaccat |
112 |
Q |
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| T |
45402928 |
aagcaaaggcaacaaacccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcatcat |
45403027 |
T |
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| Q |
113 |
atccttgtccacaaaatcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgt |
179 |
Q |
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| T |
45403028 |
atccttgtccacaaaatcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgt |
45403094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 45402087 - 45402124
Alignment:
| Q |
25 |
caaacccacctaagaaaacaacataccttgttccatta |
62 |
Q |
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| T |
45402087 |
caaaccaacctaagtaaacaacataccttgttccatta |
45402124 |
T |
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