View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_4 (Length: 445)
Name: NF14689_low_4
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 7261256 - 7260858
Alignment:
| Q |
1 |
agttttggggacgttaatatatttaattcatagataaataattaaaataaattattttgatgnnnnnnntgatcgattacgagagataaagtcacaaaac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7261256 |
agttttggggacgttaatatatttaattgatagataaataattaaaataaattattttgatgaaaaaaatgatcgattacgagagataaagtcacaaaac |
7261157 |
T |
|
| Q |
101 |
ttaaagttacctaagtagaatccgactcgttcttaagttagataaatataaatagaactgcactatgagggttagtaatttatttatagtctttgaataa |
200 |
Q |
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|||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7261156 |
ttaaagttacctaagtagaatccgacactttcgtaagttacataaatataaatagaactgcactatgagggttagtaatttatttatagtctttgaataa |
7261057 |
T |
|
| Q |
201 |
tttgtttatggacttgacacataacactgatatcttcaaacttaaaggatacttgctgataaagtatcagcaactggatacttggttgttgttcctgatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7261056 |
tttgtttatggacttgacacataacactgatatcttcaaacttaaaggatacttgctgataaagtatcagcaactggatacttggttgttgttcctgatc |
7260957 |
T |
|
| Q |
301 |
ttctatatggtgactacgctgatattgataatccgcaattcgatcgattttcatggagaaaggctcatggaccggtcagtttcttgctcacaaatgcaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7260956 |
ttctatatggtgactacgctgatattgataatccgcaattcgaccgattttcatggagaaaggctcatggaccggtcagtttcttgatcacaaatgcaa |
7260858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 53363693 - 53363725
Alignment:
| Q |
30 |
atagataaataattaaaataaattattttgatg |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
53363693 |
atagataaataattaaaataaattattttgatg |
53363725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 52198418 - 52198386
Alignment:
| Q |
30 |
atagataaataattaaaataaattattttgatg |
62 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
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|
| T |
52198418 |
atagataaatgattaaaataaattattttgatg |
52198386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 40717668 - 40717637
Alignment:
| Q |
31 |
tagataaataattaaaataaattattttgatg |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
40717668 |
tagataaataattaaaataaattattttgatg |
40717637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 45487244 - 45487290
Alignment:
| Q |
14 |
ttaatatatttaattcatagataaataattaaaataaattattttga |
60 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||| ||||||||| |
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|
| T |
45487244 |
ttaatgtatttaattaatagataaacaattaaaataagttattttga |
45487290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7536975 - 7537035
Alignment:
| Q |
1 |
agttttggggacgttaatatatttaattcatagataaataattaaaataaattattttgat |
61 |
Q |
| |
|
|||||||| || ||||| ||||| ||| ||| |||||| ||||||||||||||||||||| |
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|
| T |
7536975 |
agttttggtgagtttaatgtatttgattgatatataaatgattaaaataaattattttgat |
7537035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 26056860 - 26056832
Alignment:
| Q |
30 |
atagataaataattaaaataaattatttt |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26056860 |
atagataaataattaaaataaattatttt |
26056832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 20224925 - 20224953
Alignment:
| Q |
30 |
atagataaataattaaaataaattatttt |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20224925 |
atagataaataattaaaataaattatttt |
20224953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 44309437 - 44309465
Alignment:
| Q |
30 |
atagataaataattaaaataaattatttt |
58 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
44309437 |
atagataaataattaaaataaattatttt |
44309465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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