View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14689_low_5 (Length: 438)
Name: NF14689_low_5
Description: NF14689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14689_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 34282024 - 34281629
Alignment:
| Q |
1 |
atgcaaacgagtttccctaacttagagtatctcgcaattgaaattgttgaagaaaaatatatgaaggtaagtattacannnnnnnnnnn-----aaatga |
95 |
Q |
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| T |
34282024 |
atgctaacgagttgccctaacttagagtatctcgcaattgaaattgttgaagaaaaatatatgaaggtaagtattacaaaattttaatttttttaaatga |
34281925 |
T |
|
| Q |
96 |
tttgaagtatatgttatatagatttaatcgtttttgaggaaatatattataagaatttaatttgttacattaatgttgacgtaaactatttttatacatg |
195 |
Q |
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| T |
34281924 |
tttgatatatatgttatatagatttaatt-tttttgaggaaatatattataagaatttaatttgttacattaatgttgacgtaaactatttttatacatg |
34281826 |
T |
|
| Q |
196 |
tatccgattatatttcaacatatagatgctgtagatatgagaaattaacatgatcaagtgatatcatattttaatttaattaattgaatatatgtgcata |
295 |
Q |
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| T |
34281825 |
tatctgattatatttcaacatatagacgttgtagatatgagaaattaacatgatc--gtgatatcatattttaatttaattaattgattatatgtgcata |
34281728 |
T |
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| Q |
296 |
aaaaagttatattgtttaa-tttggggaacnnnnnnnnngtttacatagtcaaaatatagaaattaacttgggtttataatttgattttcattttgaca |
393 |
Q |
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| T |
34281727 |
aaaaagttatattgtttaattttggggaacttttttttttattacatagtcaaaatatagaaattaacttgggtctataatttgattttcattttgaca |
34281629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 34297644 - 34297420
Alignment:
| Q |
90 |
aaatgatttgaagtatatgttatatagatttaatcgtttttgaggaaatatattataagaatttaatttgt-tacattaatgttgacgtaaactattttt |
188 |
Q |
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| T |
34297644 |
aaatgatttgctgtacatgttatatagatttaatttttttacagggtatatattataagaatttgatttgtatacattaatgtcggcataaactattttt |
34297545 |
T |
|
| Q |
189 |
atacatgtatccgattatatttcaacatatagatgctgtagatatgagaaattaacatgatcaagtgatatcatattttaatttaattaattgaatatat |
288 |
Q |
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||||||| ||| ||| |||||||||||||||||| ||||||||| ||| ||||||||||| ||| || |||||| |||||||||||||||||| ||||| |
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| T |
34297544 |
atacatgcatctgataatatttcaacatatagatattgtagatataagacattaacatgataaagagaaatcatagtttaatttaattaattgattatat |
34297445 |
T |
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| Q |
289 |
gtgcataaaaaagttatattgttta |
313 |
Q |
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| T |
34297444 |
gtgaataaaaaagttacatagttta |
34297420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 225 - 317
Target Start/End: Complemental strand, 34288179 - 34288087
Alignment:
| Q |
225 |
tgtagatatgagaaattaacatgatcaagtgatatcatattttaatttaattaattgaatatatgtgcataaaaaagttatattgtttaattt |
317 |
Q |
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||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
34288179 |
tgtagatatgagaaattaacatgataaagggatatcatagtttagtttaattaattgaatatacgtgcataaaaaagttacattgtttaattt |
34288087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 34288339 - 34288207
Alignment:
| Q |
91 |
aatgatttgaagtatatgttatatagatttaatcgtttttgaggaaatatattataagaatttaatttgt-tacattaatgttgacgtaaactattttta |
189 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||| ||||| | | |||| | |||||| |
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| T |
34288339 |
aatgatttggtgtatatgttatatagatttaattttttaagagggcatatattataagaatttaatttgtatacatcaatgtcggcataaattgttttta |
34288240 |
T |
|
| Q |
190 |
tacatgtatccgattatatttcaacatatagat |
222 |
Q |
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| T |
34288239 |
tacatttatctgattatattccaacatatagat |
34288207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 34288421 - 34288358
Alignment:
| Q |
15 |
ccctaacttagagtatctcgcaattgaaattgttgaagaaaaatatatgaaggtaagtattaca |
78 |
Q |
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| T |
34288421 |
ccctaacctagagcatctcacaattgaaattgttgagaaaaaatatatgaatgtaagtattaca |
34288358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 396
Target Start/End: Complemental strand, 34297424 - 34297395
Alignment:
| Q |
367 |
gtttataatttgattttcattttgacaagt |
396 |
Q |
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| T |
34297424 |
gtttataatttgattttcattttgacaagt |
34297395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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