View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_high_15 (Length: 271)
Name: NF1468_high_15
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 28018047 - 28017820
Alignment:
| Q |
1 |
catgctgaatatgaacagaa-tgacaacaaagaaatggaaggaatgaatgaatgacctcaatgtttgataatcattttgtgtggtattattagcttgaat |
99 |
Q |
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| T |
28018047 |
catgctgaatatcaacagaaatgacaacaaagaaatgggaggaatgaatga----cctcaatgtttgataatcattttgtgtggcatta---gcttgaat |
28017955 |
T |
|
| Q |
100 |
tagacacttcttcatgtatctccatgcatcctgaattatctttgctgcacgtgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatc |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
28017954 |
tagacacttcttcatgtttctccatgcatcctgaattacctttgctgcaagtgatctccaataaggtgattgatacctaacataacacaacaa-caaatc |
28017856 |
T |
|
| Q |
200 |
atgatgtcagagacatggttttgatgatagatatta |
235 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
28017855 |
atgatgtcagagacatggttttgataatagatatta |
28017820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27917402 - 27917175
Alignment:
| Q |
1 |
catgctgaatatgaacagaatgacaacaaagaaatggaaggaatgaatgaatgacctcaatgtttgataatcattttgtgtggtattattagcttgaatt |
100 |
Q |
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|||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || |
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| T |
27917402 |
catgctgaatatcgacagaaagacaacaaggaaatggaaggaatgaatga----cctcaatgtttgataatcattttgtgtggtattt---gctggcctt |
27917310 |
T |
|
| Q |
101 |
agacacttcttcatgtatctccatgcatcctgaattatctttgctgcacgtgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatca |
200 |
Q |
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| T |
27917309 |
agacgcttcttcctgtatctccatgcaacctgaattctcgttgctgcaagggatctccaataaggtgattcatacctaacataacacaacaaccatatca |
27917210 |
T |
|
| Q |
201 |
tgatgtcagagacatggttttgatgatagatatta |
235 |
Q |
| |
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||||||||||||||| ||| |||| | |||||||| |
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| T |
27917209 |
tgatgtcagagacatagttatgataagagatatta |
27917175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 28047640 - 28047459
Alignment:
| Q |
51 |
atgacctcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatctttgctgcacg |
150 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| ||| | |||||| ||||||| || |||||||||| |||||||| | ||||||||| | |
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| T |
28047640 |
atgacctcaatgtttgataataattttgtgtggtatta---gctcgtcttagacgcttcttcctgcttctccatgcaacctgaattctgtttgctgcaag |
28047544 |
T |
|
| Q |
151 |
tgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatcatgatgtcagagacatggttttgatgatagatatta |
235 |
Q |
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| T |
28047543 |
tgatctccaataaggtgattgatacctaacataacacaacaaccaaatcatgatgtcagagacatggttttgataatagatatta |
28047459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 28074786 - 28074634
Alignment:
| Q |
45 |
gaatgaatgacctcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatctttgc |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
28074786 |
gaatgaatgaccttaatgtttgataatcattttgtgtggtatta---gcttgacttagacacttcttcatgtttctccatgcatcctgaattctttttgc |
28074690 |
T |
|
| Q |
145 |
tgcacgtgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatca |
200 |
Q |
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|||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28074689 |
tgcaaggaatctccaataaggtgattcatacctaacataacacaacaaccaaatca |
28074634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 28035757 - 28035576
Alignment:
| Q |
40 |
ggaatgaatgaatgacctcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatc |
139 |
Q |
| |
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|||| |||||||||||| | |||||||||||| |||||||||||||||| |||||| |||||| ||||||| | | ||||||||| |||||||| | |
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| T |
28035757 |
ggaaggaatgaatgaccacgatgtttgataattattttgtgtggtatta---gcttgacttagacgcttcttcctattgctccatgcaacctgaattctg |
28035661 |
T |
|
| Q |
140 |
tttgctgcacgtgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatcatgatgtcagagacatggttttgat |
224 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
28035660 |
tttgctgcaagtgatctccaataaggtgattgatacctaacatgacacaacaaccaaatcatgatgtcagagccatggttttgat |
28035576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 28091784 - 28091631
Alignment:
| Q |
57 |
tcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatctttgctgcacgtgatct |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | |||||| |||||| |||||||||||||| || ||||| | ||||||||| ||||||| |
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| T |
28091784 |
tcaatgtttgataatcattttgtgtggtatta---gctttacttagacgtttcttcctgtatctccatgcaacccgaattctatttgctgcaagtgatct |
28091688 |
T |
|
| Q |
157 |
ccaataaggtgattcatacctaacgtaacacaacaaccaaatcatgatgtcagagacatg |
216 |
Q |
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||| |||| ||||||||||||||| |||| | ||||||||||| ||||||||| |||| |
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| T |
28091687 |
ccagtaagttgattcatacctaacataac---ataaccaaatcatcatgtcagagtcatg |
28091631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 27922165 - 27922091
Alignment:
| Q |
150 |
gtgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatcatgatgtcagagacatggttttgat |
224 |
Q |
| |
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||||| ||| |||||| |||||||||||||| |||||||| | |||||||| ||||||||| |||||||||||| |
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| T |
27922165 |
gtgatttcccataaggcgattcatacctaacataacacaatcatcaaatcattatgtcagagccatggttttgat |
27922091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 28018767 - 28018603
Alignment:
| Q |
57 |
tcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatctttgctgcacgtgatct |
156 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| | |||||| ||||||| | |||||||||| |||||||| | |||| | | ||||| | |
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|
| T |
28018767 |
tcaatgtttgatgatcattttgtgg-----tattagctcgtcttagacgcttcttcctacttctccatgcaacctgaattctgtttggtctatgtgattt |
28018673 |
T |
|
| Q |
157 |
ccaataaggtgattcatacctaacgtaacacaacaac--caaatcatgatgtcagagacatggttttgat |
224 |
Q |
| |
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|| |||||| |||||||||||||| |||||||| | | ||||||| ||||||||| |||||||||||| |
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| T |
28018672 |
cccataaggcgattcatacctaacataacacaatatcgtcaaatcaatatgtcagagccatggttttgat |
28018603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 28534418 - 28534354
Alignment:
| Q |
116 |
tatctccatgcatcctgaattatctttgctgcacgtgatctccaataaggtgattcatacctaac |
180 |
Q |
| |
|
|||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
28534418 |
tatctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaac |
28534354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28001738 - 28001682
Alignment:
| Q |
1 |
catgctgaatatgaacagaatgacaacaaagaaatggaaggaatgaatgaatgacct |
57 |
Q |
| |
|
|||||||||||| | ||||| || ||||| |||||||||||||| ||| |||||||| |
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|
| T |
28001738 |
catgctgaatatcaccagaaagagaacaatgaaatggaaggaataaattaatgacct |
28001682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 1440205 - 1440036
Alignment:
| Q |
51 |
atgacctcaatgtttgataatcattttgtgtggtattattagcttgaattagacacttcttcatgtatctccatgcatcctgaattatctttgctgcacg |
150 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| ||| || |||||| ||||||| |||||||||||||| || ||||| | ||||||||| | |
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| T |
1440205 |
atgacatcaatgtttgataatcattttgtctggtatta---gctcgacttagacgcttcttcctgtatctccatgcaacccgaattctgtttgctgcaag |
1440109 |
T |
|
| Q |
151 |
tgatctccaataaggtgattcatacctaacgtaacacaacaaccaaatcatgatgtcagagacatggttttga |
223 |
Q |
| |
|
|||||||||||| | |||||||||||||| || || |||||||||||||| | | ||||| ||| ||||||| |
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|
| T |
1440108 |
tgatctccaatatgtggattcatacctaacatagcataacaaccaaatcattaggacagagtcattgttttga |
1440036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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