View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_high_18 (Length: 262)
Name: NF1468_high_18
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4649832 - 4649588
Alignment:
| Q |
1 |
caatgtagattggactcctcatctatttaattttagataatttatttttccatcatctactcattctcgcgcgccctccaaaaaccaaaaatatataggc |
100 |
Q |
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| T |
4649832 |
caatgtagattggacttctcgtctatttatttttagataatttcttttcccaccatctactcattcttgcgcgccctccaaaaaccaaaaatatagaggc |
4649733 |
T |
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| Q |
101 |
taaaatcatatttcaaatcagaagaacaattaagttttatttcttaaaaaacacttgaaacacatgtgtatgcaagttatgggttgagaaattaagttga |
200 |
Q |
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| T |
4649732 |
taaaatcatatttcaaatcagaagaacaattaagttttatttcttaaaaaacactcgaaacacatgtgtatgcaagttatgggttgagaaattaagttga |
4649633 |
T |
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| Q |
201 |
acttacgaagaattgtttaaaatacaaccgtgacatgtgtaaaac |
245 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4649632 |
acttacaaagaattgtttaaaatacaaccgtgacatgtgtaaaac |
4649588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 5572979 - 5573027
Alignment:
| Q |
130 |
ttaagttttatttcttaaaaaac-acttgaaacacatgtgtatgcaagt |
177 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
5572979 |
ttaagttttatttgttaaaaaaatacttgaaacacatgtgtatgcaagt |
5573027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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