View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1468_low_1 (Length: 479)

Name: NF1468_low_1
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1468_low_1
NF1468_low_1
[»] chr3 (29 HSPs)
chr3 (23-256)||(1649377-1649610)
chr3 (296-402)||(13366608-13366714)
chr3 (120-256)||(29239300-29239437)
chr3 (120-256)||(12947268-12947405)
chr3 (120-256)||(29922014-29922151)
chr3 (120-256)||(29971167-29971304)
chr3 (120-256)||(48199742-48199871)
chr3 (183-256)||(43488647-43488718)
chr3 (120-256)||(9998427-9998561)
chr3 (60-256)||(23799845-23800038)
chr3 (145-256)||(12149803-12149912)
chr3 (140-256)||(40487285-40487400)
chr3 (146-256)||(41818169-41818279)
chr3 (120-256)||(6954690-6954824)
chr3 (120-256)||(10233030-10233164)
chr3 (192-256)||(16235379-16235444)
chr3 (120-256)||(20464964-20465098)
chr3 (151-255)||(46934618-46934723)
chr3 (120-256)||(53807852-53807988)
chr3 (185-256)||(36461490-36461559)
chr3 (109-247)||(3606742-3606881)
chr3 (120-256)||(10108196-10108330)
chr3 (120-201)||(33579893-33579974)
chr3 (120-256)||(35864926-35865060)
chr3 (200-256)||(25631569-25631625)
chr3 (200-256)||(27706305-27706361)
chr3 (145-256)||(31271826-31271935)
chr3 (82-253)||(35175364-35175535)
chr3 (185-256)||(45568504-45568573)
[»] chr1 (26 HSPs)
chr1 (296-468)||(14008234-14008406)
chr1 (294-473)||(42935915-42936094)
chr1 (296-395)||(21221463-21221562)
chr1 (75-256)||(47132864-47133045)
chr1 (72-240)||(14872620-14872784)
chr1 (60-201)||(27580063-27580203)
chr1 (120-252)||(34528695-34528828)
chr1 (120-256)||(41994388-41994525)
chr1 (59-256)||(10776395-10776589)
chr1 (87-201)||(31919005-31919118)
chr1 (72-256)||(5983800-5983981)
chr1 (120-256)||(7836790-7836924)
chr1 (151-256)||(18569303-18569409)
chr1 (152-256)||(1742245-1742347)
chr1 (120-256)||(7337657-7337791)
chr1 (60-256)||(16262822-16263018)
chr1 (120-201)||(27456557-27456638)
chr1 (189-256)||(32679158-32679226)
chr1 (148-256)||(568801-568911)
chr1 (151-256)||(5324551-5324657)
chr1 (120-162)||(18939375-18939417)
chr1 (60-201)||(13144747-13144887)
chr1 (120-256)||(24582912-24583048)
chr1 (152-256)||(39927548-39927653)
chr1 (120-201)||(44915656-44915737)
chr1 (120-180)||(32873858-32873918)
[»] scaffold0224 (1 HSPs)
scaffold0224 (303-473)||(10686-10856)
[»] chr2 (24 HSPs)
chr2 (296-395)||(42948817-42948916)
chr2 (120-256)||(4264443-4264577)
chr2 (75-256)||(10929632-10929814)
chr2 (152-256)||(43397146-43397248)
chr2 (138-256)||(4904158-4904274)
chr2 (81-253)||(30399992-30400161)
chr2 (183-256)||(12647978-12648052)
chr2 (181-255)||(20145784-20145858)
chr2 (152-256)||(18763439-18763541)
chr2 (120-201)||(19028909-19028990)
chr2 (120-201)||(28871783-28871864)
chr2 (72-256)||(37876554-37876735)
chr2 (183-255)||(17319305-17319377)
chr2 (120-192)||(33760188-33760260)
chr2 (60-218)||(41694628-41694785)
chr2 (183-256)||(6358931-6359005)
chr2 (187-256)||(7677935-7678002)
chr2 (120-162)||(14423388-14423430)
chr2 (75-256)||(32448570-32448750)
chr2 (120-256)||(1415528-1415662)
chr2 (120-256)||(7646444-7646578)
chr2 (120-256)||(29574623-29574760)
chr2 (122-182)||(14416203-14416263)
chr2 (185-256)||(36943181-36943250)
[»] chr4 (27 HSPs)
chr4 (296-403)||(22292595-22292702)
chr4 (295-370)||(4118084-4118159)
chr4 (120-256)||(12199687-12199821)
chr4 (120-256)||(51888205-51888342)
chr4 (120-255)||(52060917-52061050)
chr4 (294-353)||(18207853-18207912)
chr4 (120-256)||(56156636-56156770)
chr4 (120-201)||(10258890-10258971)
chr4 (120-256)||(22300827-22300964)
chr4 (140-256)||(28857380-28857497)
chr4 (120-256)||(52944289-52944426)
chr4 (295-401)||(5452200-5452308)
chr4 (60-256)||(33332504-33332702)
chr4 (150-256)||(33921032-33921136)
chr4 (120-218)||(54021879-54021975)
chr4 (151-256)||(10359540-10359646)
chr4 (75-201)||(22038752-22038877)
chr4 (72-256)||(22611164-22611345)
chr4 (152-256)||(35348288-35348390)
chr4 (150-256)||(9178334-9178438)
chr4 (75-201)||(10496369-10496494)
chr4 (120-256)||(32766495-32766629)
chr4 (207-256)||(44596645-44596694)
chr4 (153-256)||(868152-868256)
chr4 (426-454)||(4117986-4118014)
chr4 (136-180)||(26090924-26090968)
chr4 (183-246)||(37683878-37683942)
[»] chr5 (21 HSPs)
chr5 (295-370)||(21157389-21157464)
chr5 (120-256)||(13421893-13422027)
chr5 (296-404)||(19390212-19390320)
chr5 (296-375)||(39480451-39480530)
chr5 (60-201)||(26878043-26878183)
chr5 (72-256)||(31391700-31391881)
chr5 (60-180)||(10722795-10722914)
chr5 (120-256)||(38597757-38597891)
chr5 (75-256)||(28540856-28541041)
chr5 (296-352)||(43028222-43028278)
chr5 (60-218)||(7036217-7036372)
chr5 (151-256)||(42886458-42886564)
chr5 (60-201)||(41630515-41630655)
chr5 (185-256)||(11976994-11977063)
chr5 (165-256)||(14082412-14082501)
chr5 (60-218)||(8088147-8088304)
chr5 (151-244)||(7613051-7613145)
chr5 (120-256)||(6012132-6012266)
chr5 (120-256)||(13007189-13007323)
chr5 (185-256)||(14726520-14726589)
chr5 (426-454)||(21157291-21157319)
[»] chr6 (18 HSPs)
chr6 (62-255)||(3355080-3355270)
chr6 (295-353)||(164497-164555)
chr6 (145-256)||(34185712-34185824)
chr6 (120-256)||(23128580-23128714)
chr6 (140-256)||(26588486-26588603)
chr6 (60-256)||(28981136-28981332)
chr6 (120-256)||(30493491-30493628)
chr6 (295-350)||(15434718-15434773)
chr6 (151-256)||(4984560-4984666)
chr6 (124-201)||(11321467-11321544)
chr6 (120-201)||(30894615-30894696)
chr6 (120-256)||(33053162-33053296)
chr6 (185-256)||(32327276-32327345)
chr6 (151-256)||(25337548-25337654)
chr6 (151-256)||(34018522-34018625)
chr6 (60-201)||(127685-127824)
chr6 (185-256)||(68060-68129)
chr6 (153-256)||(7976204-7976308)
[»] scaffold0042 (1 HSPs)
scaffold0042 (120-256)||(92490-92627)
[»] chr8 (22 HSPs)
chr8 (72-256)||(3673404-3673585)
chr8 (120-255)||(8443503-8443639)
chr8 (82-254)||(5333391-5333563)
chr8 (120-256)||(10377652-10377786)
chr8 (120-201)||(27110457-27110538)
chr8 (120-232)||(29617266-29617379)
chr8 (110-256)||(16247205-16247349)
chr8 (60-256)||(1239330-1239525)
chr8 (72-256)||(17693559-17693740)
chr8 (120-201)||(28086805-28086886)
chr8 (136-201)||(28897725-28897790)
chr8 (120-201)||(33214663-33214744)
chr8 (75-256)||(39657410-39657595)
chr8 (109-256)||(8826172-8826319)
chr8 (60-256)||(1236630-1236825)
chr8 (72-256)||(23230606-23230787)
chr8 (140-256)||(24099267-24099384)
chr8 (120-252)||(36948429-36948559)
chr8 (60-256)||(40211235-40211428)
chr8 (153-256)||(7883266-7883367)
chr8 (208-256)||(20227361-20227409)
chr8 (81-256)||(40619027-40619199)
[»] chr7 (20 HSPs)
chr7 (120-256)||(37837452-37837586)
chr7 (120-256)||(9977200-9977334)
chr7 (109-256)||(45349782-45349927)
chr7 (60-256)||(19404692-19404885)
chr7 (72-256)||(42978573-42978754)
chr7 (120-256)||(3394434-3394573)
chr7 (145-256)||(26623809-26623918)
chr7 (82-180)||(35132984-35133081)
chr7 (72-256)||(30756766-30756947)
chr7 (157-256)||(969478-969578)
chr7 (157-256)||(24069425-24069525)
chr7 (120-201)||(5792812-5792893)
chr7 (120-256)||(8001540-8001674)
chr7 (207-256)||(9450216-9450265)
chr7 (120-256)||(19296833-19296967)
chr7 (120-256)||(34899601-34899735)
chr7 (120-256)||(39328784-39328918)
chr7 (60-201)||(46700051-46700191)
chr7 (124-247)||(25255199-25255320)
chr7 (208-256)||(44311874-44311922)
[»] scaffold0445 (1 HSPs)
scaffold0445 (138-256)||(1305-1421)
[»] scaffold0634 (1 HSPs)
scaffold0634 (145-256)||(8473-8582)
[»] scaffold0136 (1 HSPs)
scaffold0136 (150-256)||(10066-10170)
[»] scaffold0049 (1 HSPs)
scaffold0049 (67-202)||(71242-71376)
[»] scaffold0039 (1 HSPs)
scaffold0039 (75-255)||(93065-93246)
[»] scaffold0347 (1 HSPs)
scaffold0347 (120-256)||(5988-6125)
[»] scaffold0017 (1 HSPs)
scaffold0017 (60-256)||(32682-32875)
[»] scaffold0127 (1 HSPs)
scaffold0127 (120-256)||(15452-15587)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 1649610 - 1649377
Alignment:
Q  23 atttcataggaacgaccttgcaaactaccaatagataatgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||| | ||||||||| ||||||||    
T  1649610 atttcataggaacgaccttgcaaactaccaatagataatgataaaatccaagtcaccaaaatactcaaatttttgaatccgtagaagttgacgccataat 1649511  T
Q  123 cattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggaga 222  Q
    |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1649510 cattgattaaatctgtaattgtctgaagtcgatctttcaataggaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggaga 1649411  T
Q  223 acaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||||||||||||||||||| ||||||||    
T  1649410 acaatacaacgccacactcagacgacgaaatcac 1649377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 13366714 - 13366608
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| | |||  ||||||| ||||| ||| |||||  ||||||||||||    
T  13366714 atctttatatctaatccaaaggtacatttgcaaacaatactaacaaaaccctaaaacaagcttatttggcactaaagacattttgccccacctaaccaca 13366615  T
Q  396 attaatg 402  Q
     ||||||    
T  13366614 cttaatg 13366608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 29239437 - 29239300
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    ||||||||||||||||| | |||| ||||||  |||||| ||| | |||| ||| ||||||  |||||||||| |||||||| || | ||||||||||||    
T  29239437 aatcattgattaaatctgtgattgactgaagctgatcttccaatacgaaccaaacgaacaccacaacaagacgtgaaatcaaacagcgccgcacaagacg 29239338  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||||| ||||||||||||||||||||    
T  29239337 acgaacaacacaacgccgcactcagacgatgaaatcac 29239300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 12947268 - 12947405
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    |||||| |||| ||||||| |||| ||||||| ||| |||||| |||||| ||| ||||||  |||||||| |||||||||| |||| ||||||||||||    
T  12947268 aatcatcgattgaatctatgattgactgaagttgatatttcaatatgaaccaaacgaacaccacaacaagatgcgaaatcaaacaacgccgcacaagacg 12947367  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||| ||| |||||| |||| ||||||||    
T  12947368 acgaacaacacaaagccgcactcaaacgacgaaatcac 12947405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 29922151 - 29922014
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    ||||||||||| ||| | | ||||  |||||| |||||||||| |||||| |||   ||||  ||||||||||||||||||| | ||  | |||||||||    
T  29922151 aatcattgattgaatatgtgattggttgaagttgatctttcaatatgaacgaaatatacaccgcaacaagacgcgaaatcaaacgacgtcacacaagacg 29922052  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |  ||||| |||||||||||||||||||| ||||||||    
T  29922051 ggaaacaacacaacgccacactcagacgacgaaatcac 29922014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 29971304 - 29971167
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    ||||||||||| ||| | | ||||  |||||| |||||||||| |||||| |||   ||||  ||||||||||||||||||| | ||  | |||||||||    
T  29971304 aatcattgattgaatatgtgattggttgaagttgatctttcaatatgaacgaaatatacaccgcaacaagacgcgaaatcaaacgacgtcacacaagacg 29971205  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |  ||||| |||||||||||||||||||| ||||||||    
T  29971204 ggaaacaacacaacgccacactcagacgacgaaatcac 29971167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 48199871 - 48199742
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||||||| ||||||||  |||||| |||||||||| | |||| ||| ||||||  ||||||||  |||||||||    ||  ||||||||      
T  48199871 aatcattgattaaatttataattgattgaagttgatctttcaataggaaccaaacgaacaccacaacaagatacgaaatcaa----acgtcacaagac-- 48199778  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||||||||||||||| ||||||||    
T  48199777 -gaacaacacaacgccacactcagacgacgaaatcac 48199742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 43488647 - 43488718
Alignment:
Q  183 caacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||||||  || ||||||||||||  |||||| ||||||||||||| |||||| ||||||||    
T  43488647 caacaagacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcac 43488718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 9998561 - 9998427
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||||||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  9998561 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactaaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 9998464  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  9998463 cgaacaacacaacgccgcacttagacgacgaaatcac 9998427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 23799845 - 23800038
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| ||||||   ||||||||||  ||| ||||||||| | ||||| |||  ||||||||||| ||| | |||||| |||  |||| |||||    
T  23799845 atgataaaatctaagtcattgaaatactcatgttttcggatctgca-acgttgacgccgaaatcattgattgaatttgtaattgactggtgtcgttcttt 23799943  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||| |||||||  ||||||  | ||||||||||||||||  ||| ||||||||||||   || || |||||||| || | |||||| ||||||||    
T  23799944 caacaggaactaagcgaacactgcgacaagacgcgaaatca--aacgccgcacaagacgactaagaacacaacgccgcaattagacgacgaaatcac 23800038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 12149803 - 12149912
Alignment:
Q  145 ctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    |||| ||||||||||||| | |||||||| |||||   | ||||||||||||||||  ||| | ||||||||||  ||||||||||||||| |||| |||    
T  12149803 ctgatgtcgatctttcaataggaactaaacgaacatcgcgacaagacgcgaaatca--aacgctgcacaagacgatgaacaatacaacgccgcacttaga 12149900  T
Q  245 cgatgaaatcac 256  Q
     || ||||||||    
T  12149901 tgacgaaatcac 12149912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 40487400 - 40487285
Alignment:
Q  140 attgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacac 239  Q
    |||| |||| || |||||||||| | ||||| ||  |||||  | ||||||||||||||||| ||| ||||||||||||  |||||| |||||||| |||    
T  40487400 attgactgatgtagatctttcaataggaactgaacaaacaccgcgacaagacgcgaaatcaa-aacgccgcacaagacgacgaacaacacaacgccgcac 40487302  T
Q  240 tcagacgatgaaatcac 256  Q
    | |||||| ||||||||    
T  40487301 ttagacgacgaaatcac 40487285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 41818279 - 41818169
Alignment:
Q  146 tgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    |||||| |||||||||| | |||| ||| |||||   ||||||||||||||||||| ||| |||||||||||||  |||||| |||| | | |||||| |    
T  41818279 tgaagttgatctttcaataggaac-aaacgaacatcacaacaagacgcgaaatcaaacaataccgcacaagacgacgaacaacacaatgtcgcactcata 41818181  T
Q  245 cgatgaaatcac 256  Q
    ||||||||||||    
T  41818180 cgatgaaatcac 41818169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 6954690 - 6954824
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||    |||| ||||||||||||  || ||||||||||||     
T  6954690 aatcattggttgaatttgtaattgactgatgtagatctttcaataggaactgaacaaacaccgtgacaaaacgcgaaatcaa--acgccgcacaagacga 6954787  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     ||||||||||||||| |||| |||||| ||||||||    
T  6954788 cgaacaatacaacgccgcacttagacgacgaaatcac 6954824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 10233164 - 10233030
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  10233164 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactgaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 10233067  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  10233066 cgaacaacacaacgccgcacttagacgacgaaatcac 10233030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 16235444 - 16235379
Alignment:
Q  192 gcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||| |||| ||||||||||||| |||||| |||||| | |||| |||||||||||||||    
T  16235444 gcgaaatcaaacaacgccgcacaagacggcgaacaacacaacgtcgcactaagacgatgaaatcac 16235379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 20464964 - 20465098
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||| ||| ||| | |||||| ||||| |||||||||||| | ||  |||| ||||||  | ||||||||| ||||||  ||| ||| ||||||||     
T  20464964 aatcatttattgaatttgtaattgactgaaatcgatctttcaataggatttaaatgaacaccgcgacaagacgcaaaatca--aacgccgtacaagacga 20465061  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||| || |||| |||||||||||||||    
T  20465062 cgaacaacacaacacctcacttagacgatgaaatcac 20465098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 46934723 - 46934618
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    |||||||||||| |||||  ||| ||||||  ||| |||||| |||||||| |||||||||||||||||  |||||| | | | ||||||| ||| ||||    
T  46934723 tcgatctttcaatatgaatcaaatgaacaccgcaagaagacgggaaatcaaacaacaccgcacaagacgacgaacaacaaaccaccacacttagatgatg 46934624  T
Q  250 aaatca 255  Q
    ||||||    
T  46934623 aaatca 46934618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 53807852 - 53807988
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||| ||||||| |||||||||| ||||||  || ||||||| |||||||| || ||||| |||||  ||||| ||||||    
T  53807852 aatcattgattgaatctgtgattgactgaagttgatctttcaatatgaac-caacgaacacagcaacaagatgccaaatcaaacaatgccgcagaagacg 53807950  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||| | | |||| |||||| ||||||||    
T  53807951 acgaacaacacaaggtcgcacttagacgacgaaatcac 53807988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 36461490 - 36461559
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  36461490 acaagacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 36461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 3606881 - 3606742
Alignment:
Q  109 gttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatca-acaacac 207  Q
    ||||||| || |||||||| || ||| | ||||||||  ||||||||||||||| |   || ||| ||||||  |||||||||| || |||| ||||| |    
T  3606881 gttgatgacaaaatcattgtttgaatatgtaattgtccaaagtcgatctttcaatagataccaaacgaacaccacaacaagacgggatatcatacaacgc 3606782  T
Q  208 cgcacaagacggagaacaatacaacgccacactcagacga 247  Q
    | |||||||||  |||||| |||| ||| |||||||||||    
T  3606781 cacacaagacgacgaacaacacaatgccgcactcagacga 3606742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 10108330 - 10108196
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| |   |||||  | |||| ||||||||||||  || ||||||||||||     
T  10108330 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactgagcaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 10108233  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  10108232 cgaacaacacaacgccgcacttagacgacgaaatcac 10108196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 33579974 - 33579893
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    |||||||| || ||| | |||||| |||| ||||||||||||| ||||| |||| ||||||  | ||||||||| |||||||    
T  33579974 aatcattggttgaatttgtaattgactgatgtcgatctttcaatatgaaataaacgaacaccgcgacaagacgcaaaatcaa 33579893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 35864926 - 35865060
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | ||||||  ||| ||||||||||||| | |||||||| ||||||  | | ||||||| ||||||  ||| || |||||||||     
T  35864926 aatcattgattgaatttgtaattgattgatgtcgatctttcaataggaactaaacgaacaccgcgaaaagacgcaaaatca--aacgccacacaagacga 35865023  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
      ||||| |||||||| || | |||||| ||||||||    
T  35865024 ctaacaacacaacgccgcaattagacgacgaaatcac 35865060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 25631569 - 25631625
Alignment:
Q  200 aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||| |||||||||||||||||||| | | | ||||||| ||| |||||||||||    
T  25631569 aacaacgccgcacaagacggagaacaacaaaccaccacacttagatgatgaaatcac 25631625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 27706305 - 27706361
Alignment:
Q  200 aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||| ||||||||||||  |||||| |||||| |||||| |||||| ||||||||    
T  27706305 aacaacgccgcacaagacgacgaacaacacaacgtcacactaagacgacgaaatcac 27706361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 31271826 - 31271935
Alignment:
Q  145 ctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    |||||||||||||||| | |||||||||| |||  |  | ||||||||||||||||  ||  ||||||||||||  |||||| ||||  || |||| |||    
T  31271826 ctgaagtcgatctttccatatgaactaaacgaatgccgcgacaagacgcgaaatca--aatgccgcacaagacgacgaacaacacaaaaccgcacttaga 31271923  T
Q  245 cgatgaaatcac 256  Q
    ||| ||||||||    
T  31271924 cgaagaaatcac 31271935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 35175535 - 35175364
Alignment:
Q  82 aatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacaca 181  Q
    |||||||||  ||| ||||||||| | ||||||| |  ||||||||||| ||| | | |||| ||||||  |||||||||| || ||| ||| ||||||     
T  35175535 aatactcatgttttcggatctgca-acgttgatgtccaaatcattgattgaatatgtgattgactgaagctgatctttcaatataaaccaaacgaacacc 35175437  T
Q  182 tcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaat 253  Q
     |||||||||  |||||| |||||| | ||||||||||  |||||| |||| | |  |||||||||| |||||    
T  35175436 gcaacaagacatgaaatcaaacaacgctgcacaagacgatgaacaacacaatgtcgtactcagacgacgaaat 35175364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 45568504 - 45568573
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||||||||||  ||| || |||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  45568504 acaagacgcgaaatca--aacgccacacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 45568573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 296 - 468
Target Start/End: Original strand, 14008234 - 14008406
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  14008234 atctttatatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcactaaacacaatttggtacacctaaccaca 14008333  T
Q  396 attaatgcataacaacttgagtaccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcat 468  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14008334 attaatgcataactacttgagtacctaatgtgattttgaaattcaaatctcccaactacaaatctatattcat 14008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 294 - 473
Target Start/End: Complemental strand, 42936094 - 42935915
Alignment:
Q  294 ttatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaacca 393  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42936094 ttatctttatatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaacca 42935995  T
Q  394 caattaatgcataacaacttgagta-ccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcatctcac 473  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  42935994 caattaatgcataactacttgagtaccctaatgtgattttgaaattcaaatctccc-actacaaatctataatcatgtcac 42935915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 21221562 - 21221463
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |  |||||| ||||||||  ||||||| ||||||||||||    
T  21221562 atctttatatttaatccaaaggtacatttgcaaacaacatttacataaccctaaacctaccttatttggagctaaacaacatttgctgcacctaaccaca 21221463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 47133045 - 47132864
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||| ||||||||| |||  ||||||||| | ||||| | |  |||||| |||| ||||| | |||| ||||||  |||||||||| |||||  |||     
T  47133045 tcaccagaatactcatgcttccggatctgca-atgttgacgtccaaatcatcgattgaatctgtgattgactgaagctgatctttcaatatgaagcaaac 47132947  T
Q  175 gaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||  |||||||||||||||| || |||| |||||||| |||  |||||| |||||||| ||||||||||| ||||||||    
T  47132946 gaacaccgcaacaagacgcgaaattaaacaacgccgcacaaaacgacgaacaacacaacgccccactcagacgacgaaatcac 47132864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 14872784 - 14872620
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    ||||||||||||||| ||| |||  ||||||||| | ||||| |||  |||||||| || ||| | |||||| |||| ||||||||||||| | ||||||    
T  14872784 aagtcaccaaaatacccatgcttccggatctgca-acgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaata-gaacta 14872687  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacact 240  Q
    || ||||||  | ||||||||||||||||  ||| ||||||||||||  |||||| |||| ||| ||||    
T  14872686 aatgaacaccgcgacaagacgcgaaatca--aacgccgcacaagacgacgaacaacacaatgccgcact 14872620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 27580063 - 27580203
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||| |||||||||| |||| | ||||||| | ||||| |||  ||||||| ||| ||| | |||||  |||||||||||||||    
T  27580063 atgataaaatctaagtcaccgaaatactcatgctttcgaatctgca-atgttgacgcccaaatcatttattgaatttgtaatttactgaagtcgatcttt 27580161  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||| | |||||||| ||||||  | ||||||||| |||||||    
T  27580162 caataggaactaaatgaacaccgcgacaagacgcaaaatcaa 27580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 252
Target Start/End: Complemental strand, 34528828 - 34528695
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||| ||||||| |||||||||| || ||| |||  |||||   ||||||| |||||||| ||||||||||| |||||||    
T  34528828 aatcattgattgaatctgtgattgactgaagttgatctttcaatataaaccaaagaaacaccgaaacaagatgcgaaatcaaacaacaccgcgcaagacg 34528729  T
Q  219 gagaacaatacaacgccacactcagacgatgaaa 252  Q
      |||||| |||| ||| |||| |||||||||||    
T  34528728 acgaacaacacaatgccgcacttagacgatgaaa 34528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 41994525 - 41994388
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||||||| | | |||| |||||   |||||||||| |||||| ||| ||||||  ||||||||  ||||||| |||||| | ||||||||||    
T  41994525 aatcattgattaaatatttgattgactgaaactgatctttcaatatgaacgaaacgaacaccacaacaagatccgaaatcaaacaacgctgcacaagacg 41994426  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||||| || ||||||| |||||||||    
T  41994425 atgaacaacacaacgccgcattcagacgttgaaatcac 41994388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 10776395 - 10776589
Alignment:
Q  59 aatgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctt 158  Q
    ||||||| || | |||||||| |||||||||| ||| |||||||||| | ||||| | |  |||||||||||  || | |||||| |||| |||||||||    
T  10776395 aatgataaaacctaagtcaccgaaatactcatgcttctggatctgca-atgttgacgtccaaatcattgattggatttgtaattgactgatgtcgatctt 10776493  T
Q  159 tcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||| | ||| |||| ||||||  | |||||||||  |||||  ||| ||||| ||||||  |||||| |||||||| |||| ||||||  |||||||    
T  10776494 tcaaaaggaagtaaacgaacaccgcgacaagacgcacaatca--aacgccgcataagacgacgaacaacacaacgccgcacttagacgactaaatcac 10776589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 31919118 - 31919005
Alignment:
Q  87 tcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaac 186  Q
    |||| ||| |||||||||| | ||||||||   ||||||||||| ||  | |||||| |||| ||||||||||||||| |||||||| ||||||  | ||    
T  31919118 tcatgcttctggatctgca-acgttgatgctcaaatcattgattgaacttgtaattgactgatgtcgatctttcaacaggaactaaacgaacactgcgac 31919020  T
Q  187 aagacgcgaaatcaa 201  Q
    |||||||||||||||    
T  31919019 aagacgcgaaatcaa 31919005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 5983981 - 5983800
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||| ||| |||  ||||||||||  ||||| |||  |||||||| || ||| | |||||| |||| || |||||||||| | ||||||    
T  5983981 aagtcaccgaaatacccatgcttccggatctgcagc-gttgacgcccaaatcattggttgaatttgtaattgactgatgtagatctttcaataggaacta 5983883  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | ||||||| |||||||||  || ||||||||||||  |||||| | |||||| |||| |||||| ||||||||    
T  5983882 aacaaacaccgcgacaagacacgaaatcaa--acgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcac 5983800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 7836790 - 7836924
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| ||||||||||| | | ||| |||| |||| |  | |||||||||||||||||  ||  |||||||||||     
T  7836790 aatcattggttgaatttgtaattgactgatgtcgatctttcgataggaaataaacgaacgccgcgacaagacgcgaaatcaa--acgtcgcacaagacga 7836887  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||||||||||||    
T  7836888 cgaacaacacaacgccgcacttagacgatgaaatcac 7836924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 18569303 - 18569409
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    |||||||||||| ||||| |||| ||||||  |||||||||| |||||| |||||||||| |||||| |  |||||| ||| | ||||||||| | || |    
T  18569303 tcgatctttcaatatgaattaaatgaacaccgcaacaagacgggaaatctaacaacaccggacaagatgacgaacaacacaccaccacactcaaatgacg 18569402  T
Q  250 aaatcac 256  Q
    |||||||    
T  18569403 aaatcac 18569409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 1742347 - 1742245
Alignment:
Q  152 cgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    ||||||||||| | ||| |||| ||||||  | |||||||||||||||||  ||  |||||||||||  |||||| |||||||| |||| |||||| |||    
T  1742347 cgatctttcaataggaaataaacgaacaccacgacaagacgcgaaatcaa--acgtcgcacaagacgacgaacaacacaacgccgcacttagacgacgaa 1742250  T
Q  252 atcac 256  Q
    |||||    
T  1742249 atcac 1742245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 7337657 - 7337791
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | ||||||  ||| || |||||||||| ||||||| ||  |||||  | |||||||||||||||||  ||   ||||||||||     
T  7337657 aatcattgcttgaatttgtaattgattgatgtagatctttcaatatgaactgaacaaacaccgcgacaagacgcgaaatcaa--acgttgcacaagacga 7337754  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||||||||||||    
T  7337755 cgaacaacacaacgccgcacttagacgatgaaatcac 7337791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 16263018 - 16262822
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || ||| || ||||||||| |||  ||||||||| | ||||||||   ||||||||||| ||| | | |||| ||| ||| ||| |||    
T  16263018 atgataaaatctaaatcatcagaatactcatgcttccggatctgca-acgttgatgcacaaatcattgattgaatatgtgattgactgcagttgattttt 16262920  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| |||||  ||| ||||||  ||||||||||||||||| |||||| |||||||| ||    |||||  || ||||||||||||||||  |||||||    
T  16262919 caatatgaatcaaacgaacaccacaacaagacgcgaaatcaaacaacgccgcacaaaacaaccaacaacgcatcgccacactcagacgacaaaatcac 16262822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 27456638 - 27456557
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||  | |||||| |||| ||||||||||||| | |||||||| ||||||  | |||||||||||||||||    
T  27456638 aatcattgattgaacttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaagacgcgaaatcaa 27456557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 32679158 - 32679226
Alignment:
Q  189 gacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||||||| | || |||||||||| |  |||||| |||||||| ||||||||||||||||||||    
T  32679158 gacgcgaaatcaaactacgccgcacaagatgacgaacaacacaacgccgcactcagacgatgaaatcac 32679226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 568801 - 568911
Alignment:
Q  148 aagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggag-aacaatacaacgccacactcagac 245  Q
    |||| |||||||||||||| |||||| ||||||   |||||| ||  ||||| |||||||| ||||||||||  | |||||||||| |||||||||| ||    
T  568801 aagttgatctttcaacatgtactaaacgaacaccgtaacaagtcgtaaaatcaaacaacactgcacaagacgacgaaacaatacaatgccacactcatac 568900  T
Q  246 gatgaaatcac 256  Q
    ||  |||||||    
T  568901 gacaaaatcac 568911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 5324551 - 5324657
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    ||||| |||||| |||||  ||| ||||||  ||| |||||| |||||||| ||| |||||||||||||| |||||| | | | ||||||| ||| ||||    
T  5324551 tcgatttttcaatatgaatcaaatgaacaccgcaaaaagacgggaaatcaaacaataccgcacaagacggcgaacaacaaaccaccacacttagatgatg 5324650  T
Q  250 aaatcac 256  Q
    |||||||    
T  5324651 aaatcac 5324657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 18939417 - 18939375
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaa 162  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  18939417 aatcattgattaaatctgtaattgactgaagttgatctttcaa 18939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 13144747 - 13144887
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||  |||||||||| ||||  |||||||| || |||| | |  ||||||||||| ||| | ||||||  | |||||| |||||    
T  13144747 atgataaaatctaagtcactgaaatactcatgctttcagatctgcaaaa-ttgacgtccaaatcattgattgaatttgtaattgattaaagtcggtcttt 13144845  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||| |||||  ||| ||||||  | |||||||||||||||||    
T  13144846 caatatgaatcaaatgaacactacgacaagacgcgaaatcaa 13144887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 24583048 - 24582912
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||| ||||||  |||||||||| ||||||  || ||||||  |||||||| || ||||| |||||| ||||||||| ||    
T  24583048 aatcattgattgaatctgtgattgactgaagctgatctttcaatatgaac-caacgaacaccgcaacaagatgccaaatcaaacaacgccgcacaaggcg 24582950  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||| | |||||| ||||||  |||||||    
T  24582949 atgaacaacacaaggtcacacttagacgacaaaatcac 24582912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 39927548 - 39927653
Alignment:
Q  152 cgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatga 250  Q
    ||||||||||| |||||  ||| ||||||  |||||||||| |||||| |||||| || |||||||||  |||||| ||| | |||||||| || || ||    
T  39927548 cgatctttcaatatgaaacaaatgaacaccgcaacaagacgggaaatcaaacaacgccacacaagacgacgaacaacacaccaccacactcggatgacga 39927647  T
Q  251 aatcac 256  Q
    ||||||    
T  39927648 aatcac 39927653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 44915737 - 44915656
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||| | |||||| |||| || |||||||||| |||||||||| ||||||  | |||| |||| |||||||    
T  44915737 aatcattgattgaatttgtaattgactgatgttgatctttcaatatgaactaaacgaacaccgcgacaaaacgcaaaatcaa 44915656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 32873858 - 32873918
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacac 180  Q
    ||||||||||||||| | |||||| ||||||||| || ||||| | |||||||| ||||||    
T  32873858 aatcattgattaaatgtgtaattgactgaagtcggtcattcaataggaactaaacgaacac 32873918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 303 - 473
Target Start/End: Original strand, 10686 - 10856
Alignment:
Q  303 tatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccacaattaatg 402  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10686 tatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccacaattaatg 10785  T
Q  403 cataacaacttgagta-ccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcatctcac 473  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  10786 cataactacttgagtaccctaatgtgattttgaaattcaaatctccc-actacaaatctataatcatgtcac 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 42948916 - 42948817
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |  |||||||||||||||  ||||||| ||||||||||||    
T  42948916 atctttatatctaatccaaaggtacatttgcaaacaacatttacataaccctaaacctaccttatttggcgctaaacaacatttgctgcacctaaccaca 42948817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 4264577 - 4264443
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| | |||| ||| ||||||  ||| ||||||||||||||  ||||||||||||||||     
T  4264577 aatcattgattaaatctgtaattgactgaagttgatctttcaataagaaccaaatgaacaccgcaataagacgcgaaatca--aacaccgcacaagacga 4264480  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     ||||||  ||||  | ||||| ||||| ||||||||    
T  4264479 cgaacaacgcaacatctcactccgacgacgaaatcac 4264443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 10929814 - 10929632
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||| ||||| ||| |||  ||||||||| | ||||||| |  ||||||||||| ||||| | |||| ||||||  ||| ||||||||||||| |||     
T  10929814 tcaccagaatacacatgcttccggatctgca-acgttgatgtccaaatcattgattgaatctgtgattgactgaagctgatttttcaacatgaaccaaac 10929716  T
Q  175 gaacacatcaacaagacgcgaaatc--aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||  ||||||||||| |||||  ||||||  || ||||||||  |||||| ||||| || ||||||||||| ||||||||    
T  10929715 gaacaccgcaacaagacgctaaatcaaaacaacgtcgtacaagacgacgaacaacacaacaccgcactcagacgacgaaatcac 10929632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 43397146 - 43397248
Alignment:
Q  152 cgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    ||||||||||| ||||| |||| ||||||  | |||||||||||||||||  || || |||||||||  |||||| ||||||||||||| |||||| |||    
T  43397146 cgatctttcaatatgaaataaacgaacaccgcgacaagacgcgaaatcaa--acgccacacaagacgacgaacaacacaacgccacacttagacgacgaa 43397243  T
Q  252 atcac 256  Q
    |||||    
T  43397244 atcac 43397248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 4904158 - 4904274
Alignment:
Q  138 taattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccac 237  Q
    |||||| |||| ||||||||||||| |||||| ||| ||||||  ||||||||| | ||||||  |||  |||||||||||  |||||| ||||||||||    
T  4904158 taattgactgatgtcgatctttcaatatgaaccaaacgaacaccgcaacaagacacaaaatca--aacgtcgcacaagacgacgaacaacacaacgccac 4904255  T
Q  238 actcagacgatgaaatcac 256  Q
    |||  ||||| ||||||||    
T  4904256 actttgacgacgaaatcac 4904274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 30399992 - 30400161
Alignment:
Q  81 aaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacac 180  Q
    |||||||||| |||| ||||||||| | ||||| |||  ||||||||||| ||| | |||||| ||||||| |||||||||| | |||||||| ||||||    
T  30399992 aaatactcatgctttcggatctgca-acgttgacgcccaaatcattgattgaatttgtaattgactgaagttgatctttcaataggaactaaacgaacac 30400090  T
Q  181 atcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaat 253  Q
      | ||| || || ||||||  ||  |||||||||||| ||||||| |||| | | |||| |||||| |||||    
T  30400091 cgcgacacgatgcaaaatca--aatgccgcacaagacgaagaacaacacaatgtcgcacttagacgacgaaat 30400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 12647978 - 12648052
Alignment:
Q  183 caacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||| |||||||| |||| ||||||||||||  |||||| ||||| || |||| |||||||||||||||    
T  12647978 caacaagacgagaaatcaaacaacgccgcacaagacgacgaacaacacaacaccgcacttagacgatgaaatcac 12648052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 20145784 - 20145858
Alignment:
Q  181 atcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    ||||||||||||| || | |||||| |||||||||||    ||||| ||||||||||||||||||||| ||||||    
T  20145784 atcaacaagacgcaaattaaacaacgccgcacaagacaaccaacaacacaacgccacactcagacgataaaatca 20145858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 18763541 - 18763439
Alignment:
Q  152 cgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    ||||||||||| | |||||||| ||||||    | |||||||||||||||  || ||||||||||||  |||||| ||||| || |||| ||||||||||    
T  18763541 cgatctttcaataggaactaaacgaacaccgtgataagacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacaccgcacttagacgatgaa 18763444  T
Q  252 atcac 256  Q
    |||||    
T  18763443 atcac 18763439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 19028909 - 19028990
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||| | || ||| |||||||||||||||||| | |||||||| ||||||    |||||||||||||||||    
T  19028909 aatcattgattgaatttgtacttgactgaagtcgatctttcaataggaactaaatgaacaccgagacaagacgcgaaatcaa 19028990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 28871783 - 28871864
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    |||||||| || ||||| |||||| ||||||| |||||||||| | |||| ||| ||||||  | |||||||||||||||||    
T  28871783 aatcattggttgaatctgtaattgactgaagttgatctttcaataggaaccaaacgaacaccgcgacaagacgcgaaatcaa 28871864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 37876554 - 37876735
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||| ||| |||| ||||||||| | |||||||||  | |||||| || ||| | |||||| |||| || |||||| ||| | ||||||    
T  37876554 aagtcaccgaaatacccatgctttcggatctgca-acgttgatgcccaagtcattggttgaatttgtaattgactgatgtagatcttccaataggaacta 37876652  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | ||||||||||||||||  ||  ||||||||||||  |||||| | |||||| |||| ||||||  |||||||    
T  37876653 aacaaacaccgcgacaagacgcgaaatca--aatgccgcacaagacgacgaacaacaaaacgccgcacttagacgaccaaatcac 37876735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 17319377 - 17319305
Alignment:
Q  183 caacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    ||||||||||  ||||||||||| | |||||||||| ||||||| ||| | ||||||||||| || |||||||    
T  17319377 caacaagacggaaaatcaacaacgctgcacaagacgaagaacaacacaccaccacactcagatgacgaaatca 17319305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 33760188 - 33760260
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacg 192  Q
    ||||||||||| | |||||||||| ||||||| |||||||||| |||||  ||| ||||||  ||||||||||    
T  33760188 aatcattgattgagtctataattgactgaagttgatctttcaatatgaatcaaacgaacactgcaacaagacg 33760260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 41694785 - 41694628
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| ||||||||| |||   ||| ||| || ||||||| | |||||||||  ||||||||||| ||| | |||||| ||||||  |||||||    
T  41694785 atgataaaatctaagtcaccagaatctacatgcttctgcatctgca-acgttgatgcccaaatcattgattgaatatgtaattggctgaagctgatcttt 41694687  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaa-tcaacaacaccgcacaagacg 218  Q
    ||||| |||| || | |||||  |||||||| |||||| | |||||||||| ||||||||    
T  41694686 caacaggaaccaaga-aacaccgcaacaagaggcgaaattaaacaacaccgtacaagacg 41694628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 6358931 - 6359005
Alignment:
Q  183 caacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||| |||||||||| |||| | ||||||||||  |||||| |||||| |||||||||||||  |||||||    
T  6358931 caacaagatgcgaaatcaaacaacgctgcacaagacgacgaacaacacaacgacacactcagacgacaaaatcac 6359005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 7677935 - 7678002
Alignment:
Q  187 aagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  7677935 aagacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 7678002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 14423430 - 14423388
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaa 162  Q
    ||||||||||||||||| |||||| || |||||||||||||||    
T  14423430 aatcattgattaaatctgtaattgactaaagtcgatctttcaa 14423388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 32448570 - 32448750
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||| ||||||| | ||| |||||||||| | ||||| | |  ||||||||||| ||||| | |||| ||||||  |||||||||| ||||||  ||     
T  32448570 tcaccagaatactcttgcttctggatctgca-acgttgacgtccaaatcattgattgaatctgtgattgactgaagctgatctttcaatatgaac-caac 32448667  T
Q  175 gaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||  |||||||| || ||||| ||||||  |||||||||||  |||||| |||| | | |||| |||||| ||||||||    
T  32448668 gaacaccgcaacaagatgccaaatcaaacaacggcgcacaagacgacgaacaacacaaggtcgcacttagacgacgaaatcac 32448750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 1415662 - 1415528
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| | ||||||||||| | ||| ||||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  1415662 aatcattggttgaatttgtaattgactgatgccgatctttcaataggaaataaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 1415565  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||| |||||| |  ||| |||||| ||||||||    
T  1415564 agaacaacacaacgtcgtacttagacgacgaaatcac 1415528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 7646578 - 7646444
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | |||||| |||| || |||||||||| | ||| | ||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  7646578 aatcattgattgaatttgtaattgactgatgtagatctttcaaaaagaattgaacaaacaccacgacaaaacgcgaaatcaa--acgccgcacaagacga 7646481  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| | |||||| |||| |||||| ||||||||    
T  7646480 cgaacaacataacgccgcacttagacgacgaaatcac 7646444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 29574623 - 29574760
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||| ||||||   ||||||||| |||||  |||  |||||  |||||| | | |||||||| |||  ||||||||||||    
T  29574623 aatcattgattgaatctgtgattgactgaagctaatctttcaatatgaatcaaacaaacactgcaacaaaatgtgaaatcaaacaatgccgcacaagacg 29574722  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||||| ||||| ||||| ||||||||    
T  29574723 acgaacaacacaacgccgcactcggacgacgaaatcac 29574760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 14416263 - 14416203
Alignment:
Q  122 tcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacat 182  Q
    ||||||||| ||||| |||||| ||||||||||| |||||||| |||| ||| ||| ||||    
T  14416263 tcattgattgaatctgtaattgactgaagtcgatatttcaacaggaaccaaacgaagacat 14416203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 36943181 - 36943250
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||| ||||||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  36943181 acaatacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 36943250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 403
Target Start/End: Complemental strand, 22292702 - 22292595
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| | | |  ||||||||||||||||| |||||  ||||||||||||    
T  22292702 atctttatatctaatccaaaggtacatttgcaaacaatactaacaaaaccctaaaacaatcttatttggcgctaaacacattttgccccacctaaccaca 22292603  T
Q  396 attaatgc 403  Q
     |||||||    
T  22292602 tttaatgc 22292595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 4118159 - 4118084
Alignment:
Q  295 tatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaa 370  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  4118159 tatctttatatctaatccaaaggtacatttgcaaacaacatttaaaaaaccctaaaccaagcagatttggcgctaa 4118084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 12199687 - 12199821
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||| |||||| ||||| ||| || ||||||| ||| |||||| |||||||||| ||||||  ||||||||||| ||||||| | |   |||||| |||     
T  12199687 aatctttgattgaatctgtaactgactgaagttgatatttcaatatgaactaaacgaacaccgcaacaagacgcaaaatcaaaagct--gcacaaaacga 12199784  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||||||||||||||| ||||||||    
T  12199785 tgaacaacacaacgccacactcagacgacgaaatcac 12199821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 51888205 - 51888342
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||||||| | | ||||  |||||| |||||||||| |||||| ||| ||||||  |||||||| |||||||| ||||||  |||| ||||||    
T  51888205 aatcattgattaaatttgtgattgattgaagttgatctttcaatatgaaccaaacgaacaccgcaacaagatgcgaaatcaaacaacgtcgcataagacg 51888304  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||||| ||||||||| | ||||||||    
T  51888305 atgaacaacacaacgccgcactcagacaacgaaatcac 51888342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 52060917 - 52061050
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||||| |||||| ||||||| |||||||||| | ||| |||| |||||| |||||||||| |  |||||  ||| ||| ||||||||     
T  52060917 aatcattgattgaatctgtaattgactgaagttgatctttcaataggaattaaacgaacacctcaacaagacacataatca--aacgccgtacaagacga 52061014  T
Q  220 agaacaatacaacgccacactcagacgatgaaatca 255  Q
     |||||  |||| |||||||| ||||||||||||||    
T  52061015 cgaacatcacaatgccacacttagacgatgaaatca 52061050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 18207853 - 18207912
Alignment:
Q  294 ttatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacct 353  Q
    ||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||    
T  18207853 ttatctttatatctaatccaaaggtacatttgcaaacaaaacttccaaaaccctaaacct 18207912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 56156636 - 56156770
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| ||  ||||||||| | |||||||| ||||||  | |||||||||||||||||  || || |||||||||     
T  56156636 aatcattggttgaatttgtaattgactgatgttaatctttcaagaggaactaaacgaacaccgcgacaagacgcgaaatcaa--acgccacacaagacga 56156733  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||||||||||| |||||| ||||||||    
T  56156734 cgaacaacacaacgccacacttagacgacgaaatcac 56156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 10258890 - 10258971
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||| | |||||| || | |||||||||||||||||||||||| ||||||  |  ||||||||||||||||    
T  10258890 aatcattgattgaatttgtaattgactaatgtcgatctttcaacatgaactaaacgaacaccgcgtcaagacgcgaaatcaa 10258971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 22300964 - 22300827
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    |||||| |||| ||||| | |||| || |||  |||||||||| |||| |||||  |||||  ||||| ||||||||||||| |||| ||||||||||||    
T  22300964 aatcatcgattgaatctgtgattgactaaagctgatctttcaagatgagctaaacaaacaccgcaacaggacgcgaaatcaaacaacgccgcacaagacg 22300865  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||| | ||| ||||||| ||||||||    
T  22300864 acgaacaacacaacgtcgcacacagacgacgaaatcac 22300827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 28857497 - 28857380
Alignment:
Q  140 attgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccaca 238  Q
    |||| ||||||  |||||||||| |||||  ||| ||||||  |||| ||||||| |||||| |||| |||||||||||   |||||| |||||||| ||    
T  28857497 attgactgaagctgatctttcaatatgaaacaaacgaacaccgcaactagacgcggaatcaaacaacgccgcacaagacaacgaacaacacaacgccgca 28857398  T
Q  239 ctcagacgatgaaatcac 256  Q
    || |||||||||||||||    
T  28857397 cttagacgatgaaatcac 28857380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 52944426 - 52944289
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaa-tcaacaacaccgcacaagacg 218  Q
    |||||| |||| ||||| | |||| ||||||  |||||||||| |||||  ||| ||||||  ||||||||||| ||| | |||||| |||||||| |||    
T  52944426 aatcatcgattgaatctgtgattgactgaagctgatctttcaatatgaaacaaacgaacaccgcaacaagacgcaaaattaaacaacgccgcacaaaacg 52944327  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| |||||||| ||||||||| | ||||||||    
T  52944326 acgaacaacacaacgccgcactcagactacgaaatcac 52944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 401
Target Start/End: Original strand, 5452200 - 5452308
Alignment:
Q  295 tatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacc-tagcacatttggcgctaaaca-caatttgctacacctaacc 392  Q
    |||||| |||| |||| |||||||||||||||||||||||  |||| ||||||||||| ||    ||||||||||||||| |  |||||| |||||||||    
T  5452200 tatctttatatttaattcaaaggtacatttgcaaacaatacatacataaccctaaaccctaaattatttggcgctaaacaactttttgcttcacctaacc 5452299  T
Q  393 acaattaat 401  Q
    ||| |||||    
T  5452300 acatttaat 5452308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 33332504 - 33332702
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || ||| |||||| | ||| |||||||||||||| | ||||| | |  ||||||||||| ||||| | |||||||||||| |||||||    
T  33332504 atgataaaatctaaatcatcaaaatgcccattcttttggatctgca-acgttgacgtccaaatcattgattgaatctgtgattgtctgaagttgatcttt 33332602  T
Q  160 caacatgaactaaaagaacac--atcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| |  ||| ||| ||||||    |||||||| |||||||| ||||||  |||||||| ||   ||||| |||||||| ||| ||||||| ||||||||    
T  33332603 caataaaaacgaaacgaacaccgcacaacaagatgcgaaatcaaacaacgtcgcacaaggcgacaaacaacacaacgccgcacacagacgacgaaatcac 33332702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 33921136 - 33921032
Alignment:
Q  150 gtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    ||||||||||||| | |||||||| ||||||  | |||||||| |||||||  |||  |||| ||||||| |||||| |||||||| |||| |||||| |    
T  33921136 gtcgatctttcaataggaactaaacgaacactgcgacaagacgtgaaatca--aacgtcgcataagacggcgaacaacacaacgccgcacttagacgacg 33921039  T
Q  250 aaatcac 256  Q
    |||||||    
T  33921038 aaatcac 33921032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 54021975 - 54021879
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacg 218  Q
    ||||||||||| ||| | |||||| |||| ||||||||||||| | |||||||| ||||||  | ||||||| ||||||||  ||| ||||||||||||    
T  54021975 aatcattgattcaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaagacacgaaatca--aacgccgcacaagacg 54021879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 10359540 - 10359646
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    |||||||||||| |||||  ||| ||||||  ||| |||||| |||||||| |||||||||| ||||||| |||||| | | | ||||||| ||| ||||    
T  10359540 tcgatctttcaatatgaatcaaatgaacaccacaagaagacgggaaatcaaacaacaccgcaaaagacggcgaacaacaaaccaccacacttagatgatg 10359639  T
Q  250 aaatcac 256  Q
    |||||||    
T  10359640 aaatcac 10359646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 22038752 - 22038877
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    ||||| |||||| ||| ||| ||||||||||  | |||||| || ||||||| ||| ||| | | |||| ||||||| |||||||||| |||||| |||     
T  22038752 tcaccgaaatacacatgcttctggatctgcaaca-ttgatgtcaaaatcatttattgaatatgtgattgactgaagtagatctttcaatatgaaccaaac 22038850  T
Q  175 gaacacatcaacaagacgcgaaatcaa 201  Q
    || |||  |||||||||||||||||||    
T  22038851 gagcaccacaacaagacgcgaaatcaa 22038877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 22611345 - 22611164
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||||||| |||  ||||||||| | ||||| | |  |||||||| || ||| | |||||| |||| || |||||||||| | |||||     
T  22611345 aagtcaccgaaatactcatgcttccggatctgca-acgttgacgtccaaatcattggttgaatttgtaattgactgatgtagatctttcaataggaactg 22611247  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | |||| |||| |||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  22611246 aacaaacaccgcgacaaaacgcaaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 22611164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 35348390 - 35348288
Alignment:
Q  152 cgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    ||||||||||| |  ||||||| ||||||  ||||||||  |||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| |||    
T  35348390 cgatctttcaatagtaactaaacgaacaccacaacaagaaacgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaa 35348293  T
Q  252 atcac 256  Q
    |||||    
T  35348292 atcac 35348288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 9178438 - 9178334
Alignment:
Q  150 gtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    ||||||||||||| | |||||||| |||||   | ||||||||||||||||  ||| || ||||||| |  ||||||||||||| | |||| ||| ||||    
T  9178438 gtcgatctttcaataggaactaaacgaacaacgcgacaagacgcgaaatca--aacgccacacaagatgacgaacaatacaacgtcgcacttagatgatg 9178341  T
Q  250 aaatcac 256  Q
    |||||||    
T  9178340 aaatcac 9178334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 10496494 - 10496369
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    ||||| |||||| ||| |||  ||||||||| ||||||| |||  |||||||| || ||| | |||||| |||| | ||||||||||| | ||||||||     
T  10496494 tcaccgaaatacccatgcttacggatctgca-aagttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaactaaac 10496396  T
Q  175 gaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||  | ||||||||| |||||||    
T  10496395 gaacactgcgacaagacgcaaaatcaa 10496369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 32766629 - 32766495
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | |||||| |||| || ||||||| || | ||||| ||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  32766629 aatcattgattgaatttgtaattgactgatgtagatcttttaataggaactgaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 32766532  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||| || |||| |||||| ||||||||    
T  32766531 cgaacaacacaacaccgcacttagacgacgaaatcac 32766495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 44596694 - 44596645
Alignment:
Q  207 ccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||||||  ||||||||||||| |||||| |||||| ||||||||    
T  44596694 ccgcacaagacgacgaacaatacaacgtcacacttagacgaggaaatcac 44596645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 868256 - 868152
Alignment:
Q  153 gatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    |||||||||| |||||  ||| ||||||  ||| |||||| |||||||| |||| ||||||||||||  |||||| | | | ||||||| ||| ||||||    
T  868256 gatctttcaatatgaatcaaatgaacaccgcaagaagacgggaaatcaaacaacgccgcacaagacgacgaacaacaaaccaccacacttagatgatgaa 868157  T
Q  252 atcac 256  Q
    |||||    
T  868156 atcac 868152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 4118014 - 4117986
Alignment:
Q  426 tgattttgaaattcaaatctcccaactac 454  Q
    |||||||||||||||||||||||||||||    
T  4118014 tgattttgaaattcaaatctcccaactac 4117986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 26090924 - 26090968
Alignment:
Q  136 tataattgtctgaagtcgatctttcaacatgaactaaaagaacac 180  Q
    |||||||| |||| ||||||||||||| |||||||||| ||||||    
T  26090924 tataattgactgatgtcgatctttcaagatgaactaaacgaacac 26090968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 37683942 - 37683878
Alignment:
Q  183 caacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacg 246  Q
    ||||||||||||||||| |||||| |  |||||||||  |||||| |||||||| ||||||||||    
T  37683942 caacaagacgcgaaatcaaacaactctacacaagacgatgaacaacacaacgccgcactcagacg 37683878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 21157464 - 21157389
Alignment:
Q  295 tatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaa 370  Q
    |||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  21157464 tatctttatatctaatccaaatgtacatttgcaaacaacatttaaaaaaccctaaaccaagcagatttggcgctaa 21157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 13422027 - 13421893
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | |||||| |||| ||||||||||||| | |||||||| ||||||| | |||| |||||||||||  || |||||||||||||     
T  13422027 aatcattgattgaatttgtaattgactgatgtcgatctttcaataggaactaaatgaacacaacgacaatacgcgaaatca--aataccgcacaagacga 13421930  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||  |||||| ||||||  |||||||    
T  13421929 cgaacaacacaacatcacacttagacgaaaaaatcac 13421893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 19390212 - 19390320
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 395  Q
    ||||| |||| |||||||||||||||||||||||||||| || ||||| | |||||||| |  ||||||| |||||||  ||||| | ||||||||| |     
T  19390212 atctttatatttaatccaaaggtacatttgcaaacaatactttcaaaatcttaaacctaccttatttggcactaaacaacatttgttgcacctaacctcg 19390311  T
Q  396 attaatgca 404  Q
    |||||||||    
T  19390312 attaatgca 19390320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 39480451 - 39480530
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacaca 375  Q
    ||||| ||||||||||||||||||||||||||||||| | | ||||||||||||| ||||    ||||||||||||||||    
T  39480451 atctttatatctaatccaaaggtacatttgcaaacaacactaacaaaaccctaaaactagattctttggcgctaaacaca 39480530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 26878043 - 26878183
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| ||||||||||||||| ||| ||| |||||||||| | ||||| |||  ||||||||||| ||| | |||||| |||| ||||||||||    
T  26878043 atgataaaatctaagtcaccaaaatacccatgcttctggatctgca-atgttgacgcccaaatcattgattgaatatctaattgactgatgtcgatcttt 26878141  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||| |  || |||| ||||||  | ||||||| |||||||||    
T  26878142 caagagaaattaaacgaacaccgcgacaagacacgaaatcaa 26878183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 31391700 - 31391881
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||||||| ||| |||||||||| | ||||| |||  |||||||| || ||| | |||||| |||| | ||||||||||| |  |||||    
T  31391700 aagtcaccgaaatactcatccttctggatctgca-acgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataaaaacta 31391798  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | |||||| ||||||||||  |  |||||||||||| ||||||| |||||| | |||| |||||| ||||||||    
T  31391799 aacaaacactgcgacaagatgcgaaatcaa--atgccgcacaagacgaagaacaacacaacgtcgcacttagacgacgaaatcac 31391881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 10722914 - 10722795
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||| |||||| ||| ||||||||||| || | ||||| |||  ||||||||||| ||| | ||| || |||||||||||||||    
T  10722914 atgataaaatctaagtcaccgaaatacccatgcttttggatctaca-acgttgacgcccaaatcattgattgaatttttaaatgactgaagtcgatcttt 10722816  T
Q  160 caacatgaactaaaagaacac 180  Q
    ||| | |||||||| ||||||    
T  10722815 caataggaactaaacgaacac 10722795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 38597891 - 38597757
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||||||||||||||||  || ||||||||||||     
T  38597891 aatcattggttgaatttgtaattgactgatgtagatctttcaataggaactgaacaaacaccacgacaagacgcgaaatcaa--acgccgcacaagacga 38597794  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  38597793 cgaacaacacaacgccgcacttagacgacgaaatcac 38597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 28540856 - 28541041
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||||||||| ||| ||| |||||||||| | ||||| |||  ||||||||||| ||| | | |||||||||||   ||||||||| | |||| |||     
T  28540856 tcaccaaaatacccatgcttctggatctgca-acgttgacgcccaaatcattgattgaatttgtgattgtctgaagctaatctttcaatacgaaccaaac 28540954  T
Q  175 gaacacatca--acaa--gacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||  ||  ||||  || |||||||||| |||| ||||||||||||  |||||| |||||| | |||| |||||||||||||||    
T  28540955 gaacaccacacaacaaatgatgcgaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgatgaaatcac 28541041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 43028278 - 43028222
Alignment:
Q  296 atcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacc 352  Q
    ||||| |||||||||||||||||||| ||||||||||||  |||| |||||||||||    
T  43028278 atctttatatctaatccaaaggtacaattgcaaacaatacatacataaccctaaacc 43028222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 7036372 - 7036217
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||  | |||||| ||| |||| ||||||||| | ||||| |||  |||||| |||| ||| | |||||| || | ||||||||||    
T  7036372 atgataaaatctaagtcctcgaaatacccatgctttcggatctgca-acgttgacgcccaaatcatagattcaatttgtaattgacttatgtcgatcttt 7036274  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacg 218  Q
     ||||||||||||| ||||||    ||||||||||||||||  ||| ||||||||||||    
T  7036273 taacatgaactaaacgaacaccatgacaagacgcgaaatca--aacgccgcacaagacg 7036217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 42886564 - 42886458
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    ||||||||| || |||||  ||| ||||||  ||||||| || |||||||| |||| ||||||||||||  |||||| ||| | ||||||||||| ||||    
T  42886564 tcgatcttttaatatgaatcaaatgaacactgcaacaaggcgggaaatcaaacaacgccgcacaagacgacgaacaacacaccaccacactcagatgatg 42886465  T
Q  250 aaatcac 256  Q
    |||||||    
T  42886464 aaatcac 42886458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 41630655 - 41630515
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||  |||||| ||| ||| ||||| |||| | ||||| |||  ||||||||||| ||| | |||||| |||||||||||||||    
T  41630655 atgataaaatctaagtcacggaaatacacatgcttctggatgtgca-acgttgacgcccaaatcattgattgaatttgtaattgactgaagtcgatcttt 41630557  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
     || | |||||||| ||||||    |||||||||||| ||||    
T  41630556 taataggaactaaacgaacaccgtgacaagacgcgaagtcaa 41630515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 11976994 - 11977063
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||||  ||  || ||||||||  |||||||||||||||||||| |||||| ||||||||    
T  11976994 acaagacgcgaaatcaa--acgtcgtacaagacgacgaacaatacaacgccacacttagacgacgaaatcac 11977063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 14082412 - 14082501
Alignment:
Q  165 tgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||| ||||||  | ||||||  |||||||||  || ||| ||||||||  |||||| ||||||||||||| |||||||||||||||    
T  14082412 tgaactaaatgaacaccgcgacaagatacgaaatcaa--acgccgtacaagacgacgaacaacacaacgccacacttagacgatgaaatcac 14082501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 8088147 - 8088304
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || |||||| ||||||| |  ||||||||||||| | ||||| | |  ||||||||||| ||||| | |||| ||||||  |||||||    
T  8088147 atgatataatctaaatcaccagaatactcttgtttttggatctgca-acgttgacgtccaaatcattgattgaatctgtgattgactgaagctgatcttt 8088245  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||| ||||||  || ||||||  |||||||| || ||||| |||||| ||||||||||||    
T  8088246 caatatgaac-caacgaacactgcaacaagatgccaaatcaaacaacgccgcacaagacg 8088304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 7613051 - 7613145
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    |||||||||||| |||||  ||| ||||||  |||||||||| |||||| |||||||  ||||||||||  |||||| ||| | |||||||||||    
T  7613051 tcgatctttcaatatgaatcaaatgaacaccgcaacaagacgagaaatcaaacaacattgcacaagacgacgaacaacacaccaccacactcaga 7613145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 6012132 - 6012266
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || ||||||| || | ||||| ||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  6012132 aatcattggttgaatttgtaattgactgatgtagatcttttaataggaactgaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 6012229  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||| || |||| |||||||||||||||    
T  6012230 cgaacaacacaacaccgcacttagacgatgaaatcac 6012266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 13007323 - 13007189
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||||||  |||||  | |||| || | |||||||  || ||||||||||||     
T  13007323 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactaaacaaacaccgcgacaaaacacaaaatcaa--acgccgcacaagacga 13007226  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  13007225 cgaacaacacaacgccgcacttagacgacgaaatcac 13007189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 14726520 - 14726589
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||||  ||| |||||||||||  |||||| ||||| || |||| |||||| ||||||||    
T  14726520 acaagacgcgaaatcaa--acatcgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcac 14726589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 21157319 - 21157291
Alignment:
Q  426 tgattttgaaattcaaatctcccaactac 454  Q
    |||||||||||||||||||||||||||||    
T  21157319 tgattttgaaattcaaatctcccaactac 21157291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 3355270 - 3355080
Alignment:
Q  62 gatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttca 161  Q
    |||| |||| |||||||  |||||||||| |||  ||||||||| ||||||| | |  ||||||| ||| ||| |||||||| |||| ||||| ||||||    
T  3355270 gataaaatctaagtcactgaaatactcatgcttccggatctgca-aagttgacgtccaaatcattcattgaatttataattgactgatgtcgacctttca 3355172  T
Q  162 acatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    | | |||||||| ||||||  |||||||||||||||||||  ||  | ||||||| |  |||||| ||||| || |||| ||||||||||||||    
T  3355171 ataggaactaaacgaacaccacaacaagacgcgaaatcaa--acgtcacacaagaggacgaacaacacaacaccgcacttagacgatgaaatca 3355080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 164555 - 164497
Alignment:
Q  295 tatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacct 353  Q
    |||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||    
T  164555 tatctttatatctaatccaaaggtacatttgcaaacaaaacttccaaaaccctaaacct 164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 34185712 - 34185824
Alignment:
Q  145 ctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacggagaacaatacaacgccacactcag 243  Q
    ||||||| |||||||||| |||||||||||||||||  ||||||||||| ||||| ||||||  | |||||||||   ||||  |||| ||| ||||||     
T  34185712 ctgaagttgatctttcaatatgaactaaaagaacaccacaacaagacgcaaaatcaaacaacgtcacacaagacgacaaacagcacaatgccgcactcaa 34185811  T
Q  244 acgatgaaatcac 256  Q
    |||||||||||||    
T  34185812 acgatgaaatcac 34185824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 23128714 - 23128580
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||| ||||||||||||  || || |||||||||     
T  23128714 aatcattgattgaatttgtaattgactgatgttgatctttcaataagaactgaacaaacactgcgacaaaacgcgaaatcaa--acgccacacaagacga 23128617  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||||||||||||    
T  23128616 cgaacaacacaacgccgcacttagacgatgaaatcac 23128580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 26588486 - 26588603
Alignment:
Q  140 attgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccaca 238  Q
    |||| ||||||| |||||||||| |||||| ||| ||||||  |||||||||| |||||||| |||| ||||||||||||   | ||| ||||| || ||    
T  26588486 attgactgaagttgatctttcaatatgaaccaaacgaacaccgcaacaagacgggaaatcaaacaacgccgcacaagacgacaatcaacacaactccgca 26588585  T
Q  239 ctcagacgatgaaatcac 256  Q
    |||| |||||||| ||||    
T  26588586 ctcaaacgatgaattcac 26588603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 28981332 - 28981136
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || | |||||||||| |||||||| ||||||||| | ||||| | ||  |||||||||| ||||| | |||| || ||    ||||||    
T  28981332 atgataaaatctaaatgaccaaaatacccatactttcggatctgca-atgttgacgtcaagatcattgattgaatctgtgattgactaaaactaatcttt 28981234  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
     || |||||| ||| ||||||  ||||||||  | ||||||| |||||||||| ||||||  |||||| ||||||||  ||||||||||| |||||||    
T  28981233 gaatatgaaccaaacgaacaccacaacaagatacaaaatcaaacaacaccgcagaagacgacgaacaacacaacgccgtactcagacgataaaatcac 28981136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 30493628 - 30493491
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||| |   |||| ||||||| |||||||||| |||||| ||| ||||||   |||||||  ||||||| |||||| | ||||||||||    
T  30493628 aatcattgattgaatatgagattgactgaagttgatctttcaatatgaaccaaacgaacaccagaacaagatacgaaatcaaacaacgctgcacaagacg 30493529  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| ||||| || ||||||||||| ||||||||    
T  30493528 acgaacaacacaacaccgcactcagacgaggaaatcac 30493491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 15434773 - 15434718
Alignment:
Q  295 tatcttgatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaa 350  Q
    |||||| ||||||||||||||||||| ||||||||||| | | |||||||||||||    
T  15434773 tatctttatatctaatccaaaggtacctttgcaaacaacactaacaaaaccctaaa 15434718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 4984560 - 4984666
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    |||||||||||| |||||  ||| |||||| |||  |||||| |||||||| |||||||||||||||||  |||||| | | | ||||||| ||| ||||    
T  4984560 tcgatctttcaatatgaatcaaatgaacacctcacgaagacgggaaatcaaacaacaccgcacaagacgacgaacaacaaaccaccacacttagatgatg 4984659  T
Q  250 aaatcac 256  Q
    |||||||    
T  4984660 aaatcac 4984666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 11321467 - 11321544
Alignment:
Q  124 attgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||| ||| | |||||| |||| ||||||||||||| | |||||||| ||||||  |||||||||| ||||||||    
T  11321467 attgattgaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccacaacaagacgtgaaatcaa 11321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 30894696 - 30894615
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    |||||||| || ||| | |||||| |||| ||||||||||||| |||||||||| ||||||  |  ||||||||||||||||    
T  30894696 aatcattggttgaatttgtaattgactgatgtcgatctttcaatatgaactaaacgaacaccgcggcaagacgcgaaatcaa 30894615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 33053162 - 33053296
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  33053162 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactgaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 33053259  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  33053260 cgaacaacacaacgccgcacttagacgacgaaatcac 33053296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 32327276 - 32327345
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||||||||||  || ||||||||||||  |||||| |||||||| |||| |||| ||||||||||    
T  32327276 acaagacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagactatgaaatcac 32327345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 25337654 - 25337548
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    |||||||||||| |||||  ||| ||||||  ||||||||||  ||||||| ||||||||| |||||||  |||||| ||| | |||||||| || || |    
T  25337654 tcgatctttcaatatgaatcaaatgaacaccgcaacaagacgaaaaatcaaacaacaccgcgcaagacgacgaacaacacaccaccacactcggatgacg 25337555  T
Q  250 aaatcac 256  Q
    |||||||    
T  25337554 aaatcac 25337548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 34018625 - 34018522
Alignment:
Q  151 tcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatga 250  Q
    |||||||||||| | |||||||| ||||||  | |||||||  ||||||||  ||  | |||||||||  |||||| ||||||||||||| |||||| ||    
T  34018625 tcgatctttcaataggaactaaacgaacaccgcgacaagacatgaaatcaa--acgtctcacaagacgacgaacaacacaacgccacacttagacgacga 34018528  T
Q  251 aatcac 256  Q
    ||||||    
T  34018527 aatcac 34018522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 127824 - 127685
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || ||||| |||||||||| |||  | ||||||| | ||||| |||  ||||||||||  ||| | |||||| |||| ||||||||||    
T  127824 atgataaaatctaaatcaccgaaatactcatgcttccgaatctgca-acgttgacgcccaaatcattgatcgaatttgtaattgactgatgtcgatcttt 127726  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||| | |||||||| ||||||  | |||| ||||||||||||    
T  127725 caataggaactaaatgaacaccgcgacaa-acgcgaaatcaa 127685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 68060 - 68129
Alignment:
Q  185 acaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||| ||||||||||||  || ||||||||||||| ||| || ||||| ||||||| |||||| ||||||||    
T  68060 acaaaacgcgaaatcaa--acgccgcacaagacggtgaataacacaacaccacacttagacgacgaaatcac 68129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 7976204 - 7976308
Alignment:
Q  153 gatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaa-caccgcacaagacggagaacaatacaacgccacactcagacgatgaa 251  Q
    ||||||| || |||||||||| ||||||  |||||||||||  ||| || || | ||||||||||||  |||||| |||||  | ||||||||||| |||    
T  7976204 gatcttttaatatgaactaaacgaacaccacaacaagacgcataattaaaaaacgccgcacaagacgacgaacaacacaacaacgcactcagacgacgaa 7976303  T
Q  252 atcac 256  Q
    |||||    
T  7976304 atcac 7976308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 92490 - 92627
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||  || || | |||||||||| |||||| ||| ||||||  |||||||||| |||||||| ||||| |||||||||||    
T  92490 aatcattgattgaatctgtgatttactaaaattgatctttcaatatgaaccaaacgaacaccacaacaagacgtgaaatcaaacaacatcgcacaagacg 92589  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    | || ||| |||||  ||||||||||||| ||||||||    
T  92590 gtgagcaacacaacaacacactcagacgacgaaatcac 92627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 3673585 - 3673404
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||  |||||||||| |||  ||||||||| | ||||| |||  || ||||||||  || | |||||| |||| ||||||||||||| | ||||||    
T  3673585 aagtcactgaaatactcatgcttccggatctgca-acgttgacgcccaaagcattgatttgatttgtaattgactgatgtcgatctttcaataggaacta 3673487  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    || ||||||  ||||||||| ||||||||  ||||||||| ||||||  |||||| ||||| || |||| |||||| ||||||||    
T  3673486 aaggaacaccgcaacaagacacgaaatca--aacaccgcataagacgacgaacaacacaacaccgcacttagacgacgaaatcac 3673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 8443503 - 8443639
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||| | | |||| ||||||| ||||||||||  ||||| ||| ||||||  |||||||||||| |||| |||||| ||||||||||||    
T  8443503 aatcattgattgaatatgtgattgactgaagttgatctttcaaattgaaccaaacgaacactgcaacaagacgcggaatcaaacaacgccgcacaagacg 8443602  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatca 255  Q
      |||||| ||||| || |||| |||||| |||||||    
T  8443603 acgaacaacacaacaccgcacttagacgacgaaatca 8443639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 5333563 - 5333391
Alignment:
Q  82 aatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacaca 181  Q
    ||||||||| ||| ||||||| || | ||||| |||  ||| ||||||| ||| | | |||| ||||||| |||||||||| | |||| ||| ||||||     
T  5333563 aatactcatgcttctggatctaca-acgttgacgcccaaataattgattgaatatgtgattgactgaagttgatctttcaataggaaccaaacgaacacc 5333465  T
Q  182 tcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatc 254  Q
      |||||||||| ||||||| |||||||||||||||||  |||||| ||||| || |||||||| || ||||||    
T  5333464 ggaacaagacgcaaaatcaaacaacaccgcacaagacgacgaacaacacaacaccgcactcagatgacgaaatc 5333391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 10377786 - 10377652
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| |||||||| |||| || |||||||||| | ||||| ||  |||||  | |||| ||||||||||||  || |||||||||||||    
T  10377786 aatcattggttgaatttataattgactgatgtagatctttcaataggaactgaacaaacaccacgacaaaacgcgaaatcaa--acgccgcacaagacgg 10377689  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||| | ||||||||    
T  10377688 cgaacaacacaacgccgcacttagacaacgaaatcac 10377652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 27110457 - 27110538
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||| | || |||||||| ||| |||||||||||||||||||| ||||||  | ||||||||| |||||||    
T  27110457 aatcattgattgaatttgtagttgtctgatgtcaatctttcaacatgaactaaacgaacactgcgacaagacgcaaaatcaa 27110538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 29617266 - 29617379
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||||| | |||| ||||||| | |||||||| | |||| ||| ||||||  ||||||||||||||||| |||| | ||||||||||||    
T  29617266 aatcattgattgaatctgtgattgactgaagttggtctttcaataagaaccaaacgaacaccgcaacaagacgcgaaatcaaacagcgccgcacaagacg 29617365  T
Q  219 gagaacaatacaac 232  Q
      |||||| |||||    
T  29617366 acgaacaacacaac 29617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 16247205 - 16247349
Alignment:
Q  110 ttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccg 209  Q
    ||||||||  ||||||||||| ||| | |||||   ||| ||||||||||| | | |||||||| ||||||  | |||||||| ||||||||  ||  ||    
T  16247205 ttgatgcccaaatcattgattgaatttgtaattaattgatgtcgatctttccataggaactaaacgaacaccgcgacaagacgtgaaatcaa--acgtcg 16247302  T
Q  210 cacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  16247303 cacaagacgatgaacaacacaacgccgcacttagacgaagaaatcac 16247349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 1239330 - 1239525
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || |||||| ||||||| | ||| |||||||||| | ||||| | |   |||||||||| ||| | | |||| ||||||| |||||||    
T  1239330 atgatataatctaaatcaccagaatactcttgcttctggatctgca-acgttgacgtccagatcattgattgaatatgtgattgactgaagttgatcttt 1239428  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| |||||| ||  ||||||  |||||||| || ||||||| |||| ||||||||||||  |||||| |||| | | |||| |||||| ||||||||    
T  1239429 caatatgaaccaac-gaacaccgcaacaagatgccaaatcaaacaacgccgcacaagacgatgaacaacacaaggtcgcacttagacgacgaaatcac 1239525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 17693559 - 17693740
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||| | |||||||||| |||  ||||||||| | ||||| |||  |||||||| || ||| | |||||| |||| |||||||||| || | ||||||    
T  17693559 aagtcatcgaaatactcatgcttccggatctgca-atgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatcttttaataggaacta 17693657  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | |||| |||| |||||||  || |||||||||| |  |||||||||||| || |||| |||||| ||||||||    
T  17693658 aacaaacaccgcgacaaaacgcaaaatcaa--acgccgcacaagaagacgaacaatacaacaccgcacttagacgacgaaatcac 17693740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 28086805 - 28086886
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||| | |||||  |||||||||||||||||||| ||| | || ||||||  | |||||||||||||||||    
T  28086805 aatcattgattgaatttgtaattaactgaagtcgatctttcaacaagaattgaatgaacactgcgacaagacgcgaaatcaa 28086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 28897790 - 28897725
Alignment:
Q  136 tataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    |||||||| |||| ||||||||||||| | |||||||| ||||||  | |||||||||||||||||    
T  28897790 tataattgactgatgtcgatctttcaataggaactaaacgaacaccacgacaagacgcgaaatcaa 28897725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 33214663 - 33214744
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    |||||||| || ||| | |||||| |||| | ||||||||||| | |||||||||||||||  | |||||||||||||||||    
T  33214663 aatcattggttgaatttgtaattgactgacgccgatctttcaataggaactaaaagaacaccacgacaagacgcgaaatcaa 33214744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 39657595 - 39657410
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||| ||||| ||| ||| |||||||||| | ||||| | |  ||||||||||| ||| ||| |||||||||||   ||||||||| | |||| |||     
T  39657595 tcaccagaatacccatgcttctggatctgca-acgttgacgtccaaatcattgattgaatttatgattgtctgaagctaatctttcaatacgaaccaaac 39657497  T
Q  175 gaacacatca----acaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||  ||    | |||| |||||||||| |||| ||||||||||||  ||||||||||||| | |||| |||||| ||||||||    
T  39657496 gaacaccgcacaacaaaagatgcgaaatcaaacaacgccgcacaagacgacgaacaatacaacgtcgcactaagacgacgaaatcac 39657410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 8826319 - 8826172
Alignment:
Q  109 gttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatca-acaacac 207  Q
    |||||||||  ||||||||||| |||| || |||   |||||| ||| |||||| ||||| | |||||||||  ||||||||| |||| ||| ||||| |    
T  8826319 gttgatgcccaaatcattgattgaatcgatgattcattgaagttgatatttcaatatgaa-tcaaagaacaccgcaacaagacacgaattcacacaacgc 8826221  T
Q  208 cgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    | |||||||||  |||||| | |||||  ||||||||||| ||||||||    
T  8826220 cacacaagacgacgaacaacataacgctgcactcagacgacgaaatcac 8826172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 1236630 - 1236825
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| || |||||| ||||||| | ||| |||||||||| | ||||| | |   |||||||||| ||| | | |||| ||||||| |||||||    
T  1236630 atgatataatctaaatcaccagaatactcttgcttctggatctgca-acgttgacgtccagatcattgattgaatatgtgattgactgaagttgatcttt 1236728  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| |||||| ||  ||||||  |||||||| || ||||||| |||| |||||||||||   |||||| |||| | | |||| |||||| ||||||||    
T  1236729 caatatgaaccaac-gaacaccgcaacaagatgccaaatcaaacaacgccgcacaagacaacgaacaacacaaggtcgcacttagacgacgaaatcac 1236825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 23230787 - 23230606
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||| ||| |||  ||||||||| | ||||| |||  | |||||| || ||| | |||||| |||| || |||||| ||| | ||||||    
T  23230787 aagtcaccgaaatacccatgcttccggatctgca-acgttgacgcccaagtcattggttgaatttgtaattgactgatgtagatcttccaataggaacta 23230689  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | ||||||||||||||||  ||| ||||||||||||  |||||| | | |||| |||| |||||| ||||||||    
T  23230688 aacaaacaccgcgacaagacgcgaaatca--aacgccgcacaagacgacgaacaacaaatcgccgcacttagacgacgaaatcac 23230606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 24099267 - 24099384
Alignment:
Q  140 attgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccaca 238  Q
    |||| ||||||  ||| |||||| |||||| ||| ||||||  |||||||| |||||||||| |||| | | ||| ||||  |||||| |||||| | ||    
T  24099267 attgactgaagctgatttttcaatatgaaccaaatgaacaccgcaacaagatgcgaaatcaaacaacgcggtacaggacgacgaacaacacaacgtcgca 24099366  T
Q  239 ctcagacgatgaaatcac 256  Q
    ||||||||| ||||||||    
T  24099367 ctcagacgacgaaatcac 24099384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 36948429 - 36948559
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    ||||||||||| ||| | |||||| |||| ||| || |||||| | ||| ||||  |||||  | ||||||||||||||||  ||| ||||||| ||||     
T  36948429 aatcattgattgaatttgtaattgactgatgtcaatttttcaataggaattaaacaaacaccgcgacaagacgcgaaatca--aacgccgcacaggacga 36948526  T
Q  220 agaacaatacaacgccacactcagacgatgaaa 252  Q
      ||||| ||||||| ||||| |||||||||||    
T  36948527 caaacaacacaacgcaacacttagacgatgaaa 36948559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 40211235 - 40211428
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| ||||||||||| | |||||||||| |||  |||||| || | ||||| |||  |||||||| |  ||| | |||| | |||| || |||||||    
T  40211235 atgataaaatccaagtcaacgaaatactcatgcttccggatctaca-acgttgacgcccaaatcattggtggaatttgtaatcgactgatgtagatcttt 40211333  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| |  |||||||  |||||  | |||| ||||||||||||  |||| ||| ||||||  |||||| ||||||||||| | |||||| ||||||||    
T  40211334 caatagaaactaaacaaacaccgcgacaatacgcgaaatcaa--acactgcataagacgacgaacaacacaacgccacatttagacgacgaaatcac 40211428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 7883266 - 7883367
Alignment:
Q  153 gatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaa 252  Q
    |||||||||| ||||||| ||  |||||  | |||||||| ||||||||  || ||||||||||||  |||||| |||||||| |||| ||| || ||||    
T  7883266 gatctttcaatatgaactgaacaaacaccgcgacaagacgtgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagatgacgaaa 7883363  T
Q  253 tcac 256  Q
    ||||    
T  7883364 tcac 7883367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 20227361 - 20227409
Alignment:
Q  208 cgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||| ||||||  ||||||||||||| | ||||||||||||||||||||    
T  20227361 cgcagaagacgacgaacaatacaacgacgcactcagacgatgaaatcac 20227409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 256
Target Start/End: Original strand, 40619027 - 40619199
Alignment:
Q  81 aaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacac 180  Q
    |||||||||| ||| |||||||||| | ||||| |||  ||| ||||||| ||| | |||||| ||   |||||||||| || | |||||||| ||||||    
T  40619027 aaatactcatgcttctggatctgca-acgttgacgcccaaattattgattgaatttgtaattgactattgtcgatctttgaataagaactaaatgaacac 40619125  T
Q  181 atcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      | | ||||| |||||||||  ||  | |||||||||   ||||| |||||||| |||| |||||||||||||||    
T  40619126 cgcgataagacacgaaatcaa--acgtcacacaagacgacaaacaacacaacgccgcacttagacgatgaaatcac 40619199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 37837452 - 37837586
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| ||||||||||||| | |||||||| ||||||  | ||||||||| ||||||  ||| ||||||||||||     
T  37837452 aatcattggttgaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaagacgcaaaatca--aacgccgcacaagacga 37837549  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| ||| |||||||||||    
T  37837550 cgaacaacacaacgccgcacttagatgatgaaatcac 37837586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 9977200 - 9977334
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||||||||||||||||| | |||||||| || |||  | ||||||||||||||||  ||| ||  ||||||||     
T  9977200 aatcattgtttgaatttgtaattgactgaagtcgatctttcaataggaactaaatgagcaccgcgacaagacgcgaaatca--aacgccaaacaagacga 9977297  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     ||||||||||||||  |||| |||||| ||||||||    
T  9977298 cgaacaatacaacgctgcacttagacgacgaaatcac 9977334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 45349782 - 45349927
Alignment:
Q  109 gttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacacc 208  Q
    ||||| |||| |||||||| || ||| | |||||| |||| | | ||||||||| | |||||||| ||||||  | ||||||||||||||||  ||| ||    
T  45349782 gttgacgccaaaatcattgcttgaatttgtaattgactgatgccaatctttcaataggaactaaacgaacaccgcgacaagacgcgaaatca--aacgcc 45349879  T
Q  209 gcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
     ||||| |||  |||||| ||||||||||||| |||||| ||||||||    
T  45349880 acacaaaacgacgaacaacacaacgccacacttagacgacgaaatcac 45349927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 19404692 - 19404885
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||  |||||||||| |||  |||||||||  | |||| |||  ||||||||||| ||| | |||||| | || ||| ||||||    
T  19404692 atgataaaatctaagtcactgaaatactcatgcttccggatctgcaaca-ttgacgcccaaatcattgattgaatttgtaattgacagatgtcaatcttt 19404790  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| | |||||||||||||||  | |||||| || ||||||  |||   ||||||||||  |||||||| |||||| |||| |||||| ||||||||    
T  19404791 caagaggaactaaaagaacaccgcgacaagatgcaaaatca--aacgatgcacaagacgacgaacaatagaacgccgcacttagacgacgaaatcac 19404885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 42978754 - 42978573
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||| ||| |||  ||||||||| | ||||| |||  |||||||| || ||| | | |||| |||| ||||||||||||| | ||||||    
T  42978754 aagtcaccgaaatacccatccttccggatctgca-acgttgacgcccaaatcattggttgaatttgttattgactgatgtcgatctttcaataagaacta 42978656  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    || ||||||  | | || ||| ||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  42978655 aacgaacaccgcgataaaacgagaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 42978573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 3394573 - 3394434
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgc--gaaatcaa-caacaccgcacaaga 216  Q
    ||||||||||| ||| | | |||| ||||||| |||| ||||| |||| |||||  |||||  ||| ||||| |  |||||||| ||||||| |||||||    
T  3394573 aatcattgattgaatatgtgattgactgaagttgatcattcaatatgatctaaacaaacaccgcaagaagacacacgaaatcaaacaacaccacacaaga 3394474  T
Q  217 cggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||| ||||| || ||||||||||||||||||||    
T  3394473 cgacgaacaacacaacaccgcactcagacgatgaaatcac 3394434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 26623809 - 26623918
Alignment:
Q  145 ctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    ||||||| |||||||||| | |||| |||  |||||  |||||||| || |||||||  || ||| ||||||||  |||||| |||||||| ||||||||    
T  26623809 ctgaagttgatctttcaataggaaccaaacaaacaccgcaacaagatgcaaaatcaa--acgccgtacaagacgacgaacaacacaacgccgcactcaga 26623906  T
Q  245 cgatgaaatcac 256  Q
    ||||||||||||    
T  26623907 cgatgaaatcac 26623918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 35133081 - 35132984
Alignment:
Q  82 aatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacac 180  Q
    ||||||||| |||||||||||||| | ||||| |||  ||||||||||| ||| | | |||||||||||| |||||||||| | |||| ||| ||||||    
T  35133081 aatactcatgcttttggatctgca-acgttgacgcccaaatcattgattgaatttgtgattgtctgaagttgatctttcaatacgaaccaaacgaacac 35132984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 30756766 - 30756947
Alignment:
Q  72 aagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaacta 171  Q
    |||||||| |||||||||| |||  ||||||||| | ||||||| |  ||| |||| || ||| | |||||| |||| || |||||||||| |  ||||     
T  30756766 aagtcaccgaaatactcatgcttccggatctgca-acgttgatgtccaaattattggttgaatttgtaattgactgatgtagatctttcaatagaaactg 30756864  T
Q  172 aaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||  |||||  | |||| ||||||||||||  || ||||||||||||  |||||| |||||||| |||| |||||| ||||||||    
T  30756865 aacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcac 30756947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 969478 - 969578
Alignment:
Q  157 tttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa-caacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    |||||| |||||| |||  |||||  ||| ||||||| ||||||| |||| ||||| ||||||  |||||| ||||||||||| ||| ||||||||||||    
T  969478 tttcaatatgaaccaaacaaacaccgcaataagacgcaaaatcaaacaacgccgcaaaagacgacgaacaacacaacgccacattcaaacgatgaaatca 969577  T
Q  256 c 256  Q
    |    
T  969578 c 969578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 24069425 - 24069525
Alignment:
Q  157 tttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaa-caccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    |||||| |||||  ||| ||||||  |||||| |||| ||||||| || | |||||||||||   |||||| |||||||| |||||||||||||||||||    
T  24069425 tttcaatatgaatcaaacgaacaccgcaacaatacgccaaatcaaaaaacgccgcacaagacaacgaacaacacaacgccgcactcagacgatgaaatca 24069524  T
Q  256 c 256  Q
    |    
T  24069525 c 24069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 5792893 - 5792812
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||||||||||| ||  | |||||| |||| ||||||||||||| | |||||||| ||||||    |||||||||||||||||    
T  5792893 aatcattgatttaacttgtaattgactgatgtcgatctttcaataggaactaaacgaacactgtgacaagacgcgaaatcaa 5792812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 8001540 - 8001674
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | ||||||  ||| || |||||||||| | ||||| ||  |||||  | |||||||||||||||||  || ||||||||||||     
T  8001540 aatcattgcttgaatttgtaattgattgatgtagatctttcaataggaactgaacaaacaccacgacaagacgcgaaatcaa--acgccgcacaagacga 8001637  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| | |||||| |||| |||||| ||||||||    
T  8001638 cgaacaacaaaacgccgcacttagacgacgaaatcac 8001674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 9450216 - 9450265
Alignment:
Q  207 ccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||||||||||||  |||||| ||||||||||||| |||||| ||||||||    
T  9450216 ccgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcac 9450265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 19296967 - 19296833
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||| | ||||||||||  || ||||||||||||     
T  19296967 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactgaacaaacaccgcgacaaaatgcgaaatcaa--acgccgcacaagacga 19296870  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  19296869 cgaacaacacaacgccgcacttagacgacgaaatcac 19296833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 34899601 - 34899735
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||||| ||  |||||  | |||| | ||||||||||  || ||||||||||||     
T  34899601 aatcattggttgaatttgtaattgactgatgtagatctttcaagaggaactgaacaaacaccgcgacaaaaagcgaaatcaa--acgccgcacaagacga 34899698  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| |||||||| |||| |||||| ||||||||    
T  34899699 cgaacaacacaacgccgcacttagacgacgaaatcac 34899735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 39328784 - 39328918
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| | ||||||||||| | ||| ||||  |||||  | |||| ||||||||||||  || ||||||||||||     
T  39328784 aatcattggttgaatttgtaattgactgatgccgatctttcaataggaaataaacaaacaccgcgacaaaacgcgaaatcaa--acgccgcacaagacga 39328881  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||||||  ||| |||||| ||||||||    
T  39328882 cgaacaacacaacgccgtacttagacgacgaaatcac 39328918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 46700191 - 46700051
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||| |||||  ||| |||  ||||||||| | | |||||||  ||||||||||| ||| | || ||| |||| |||||| |||    
T  46700191 atgataaaatctaagtcaccgaaatatccatgcttccggatctgca-acgctgatgcccaaatcattgattgaatttgtagttgactgatgtcgatattt 46700093  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaa 201  Q
    ||| | |||||||| ||||||  | |||||||| ||||||||    
T  46700092 caataggaactaaacgaacaccacgacaagacgtgaaatcaa 46700051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 25255320 - 25255199
Alignment:
Q  124 attgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaa 223  Q
    ||||||| ||||||||||||  |||||| ||  |||| | | |||||||| ||||||  |||| ||||  ||||||||  || | ||||||||||| |||    
T  25255320 attgattgaatctataattgattgaagttgacatttcgataggaactaaatgaacaccgcaacgagacatgaaatcaa--acgctgcacaagacggcgaa 25255223  T
Q  224 caatacaacgccacactcagacga 247  Q
     || |||||||| |||||||||||    
T  25255222 taacacaacgccgcactcagacga 25255199  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 44311874 - 44311922
Alignment:
Q  208 cgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    |||| ||||||  ||||||||||||| | ||||||||||||||||||||    
T  44311874 cgcagaagacgacgaacaatacaacgacgcactcagacgatgaaatcac 44311922  T

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Target: scaffold0445 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 1421 - 1305
Alignment:
Q  138 taattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccac 237  Q
    |||||| |||| | ||||||||||| | |||||||| ||||||  ||||||||||||||||||  ||| || |||||||||  |||||| |||||||| |    
T  1421 taattgactgatgccgatctttcaataggaactaaacgaacaccgcaacaagacgcgaaatca--aacgccacacaagacgacgaacaacacaacgccgc 1324  T
Q  238 actcagacgatgaaatcac 256  Q
    ||| |||||| ||||||||    
T  1323 acttagacgaagaaatcac 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 8582 - 8473
Alignment:
Q  145 ctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcaga 244  Q
    |||| ||||||||||||| | |||||||| |||||   | ||||||||||||||||  ||| | ||||||||||  ||||||||||||||| |||| |||    
T  8582 ctgatgtcgatctttcaataggaactaaacgaacatcgcgacaagacgcgaaatca--aacgctgcacaagacgatgaacaatacaacgccgcacttaga 8485  T
Q  245 cgatgaaatcac 256  Q
     || ||||||||    
T  8484 tgacgaaatcac 8473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 10066 - 10170
Alignment:
Q  150 gtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatg 249  Q
    ||||||||||||| | ||| |||| ||||||  | ||||||||||||||||  ||| ||||||||||||  |||||| |||| ||| |||| |||||| |    
T  10066 gtcgatctttcaataggaattaaatgaacaccgcgacaagacgcgaaatca--aacgccgcacaagacgacgaacaaaacaaagccgcacttagacgacg 10163  T
Q  250 aaatcac 256  Q
    |||||||    
T  10164 aaatcac 10170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 71242 - 71376
Alignment:
Q  67 aatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatg 166  Q
    |||| |||||| |||||||| ||| |||  ||||||||| | |||||  ||  ||||||||||| ||| |||||||| |||| | |||||||| || | |    
T  71242 aatctaagtcatcaaaatacccatgcttccggatctgca-acgttgacaccccaatcattgattgaatttataattgactgatgccgatctttaaatagg 71340  T
Q  167 aactaaaagaacacatcaacaagacgcgaaatcaac 202  Q
    ||||||| ||||||  | ||||||||||||||||||    
T  71341 aactaaacgaacaccacgacaagacgcgaaatcaac 71376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 93246 - 93065
Alignment:
Q  75 tcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaa 174  Q
    |||||| ||||| |||| || |||||||||| | ||||| | | |||||||||||| ||| | | ||||  ||||  ||||||||||| |||||| |||     
T  93246 tcaccagaatacccatatttctggatctgca-acgttgacgtcctaatcattgattcaatatgtgattgagtgaaaccgatctttcaatatgaaccaaac 93148  T
Q  175 gaacacatcaacaagacgcgaa-atc-aacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatca 255  Q
    ||||||  ||||||||| |||| ||| |||||| |||||||||||    ||||| |||||||  ||||||||||| |||||||    
T  93147 gaacaccacaacaagacacgaatatcaaacaacgccgcacaagacaacaaacaacacaacgcagcactcagacgacgaaatca 93065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 6125 - 5988
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatc-aacaacaccgcacaagacg 218  Q
    ||||||||||| ||| | | |||| |||||||  |  |||||| |||||| ||| ||||||  |||||| |||||||||| |||||| ||||||||||||    
T  6125 aatcattgattgaatatgtgattgactgaagttaacatttcaatatgaaccaaatgaacaccgcaacaatacgcgaaatcaaacaacgccgcacaagacg 6026  T
Q  219 gagaacaatacaacgccacactcagacgatgaaatcac 256  Q
      |||||| ||| |    ||||||||||| ||||||||    
T  6025 acgaacaacacatcattgcactcagacgacgaaatcac 5988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 32682 - 32875
Alignment:
Q  60 atgatacaatccaagtcaccaaaatactcatacttttggatctgcagaagttgatgccataatcattgattaaatctataattgtctgaagtcgatcttt 159  Q
    |||||| |||| |||||||| |||||||||| |||   |||||||| | ||||| | |  |||||||| || ||| | ||||||  ||| || |||||||    
T  32682 atgataaaatctaagtcaccgaaatactcatgcttccagatctgca-acgttgacgtccaaatcattgcttgaatttgtaattgattgatgtagatcttt 32780  T
Q  160 caacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacggagaacaatacaacgccacactcagacgatgaaatcac 256  Q
    ||| | ||||| ||  || ||  | |||||||||||||||||  || ||||||||||||  |||||| | |||||| |||| |||||| ||||||||    
T  32781 caataggaactgaacaaataccgcgacaagacgcgaaatcaa--acgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcac 32875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 15587 - 15452
Alignment:
Q  120 aatcattgattaaatctataattgtctgaagtcgatctttcaacatgaactaaaagaacacatcaacaagacgcgaaatcaacaacaccgcacaagacgg 219  Q
    |||||||| || ||| | |||||| |||| || |||||||||| | ||| | ||  |||||  | ||||||||||||||||| ||| ||||||||||||     
T  15587 aatcattggttgaatttgtaattgactgatgtagatctttcaataggaaatgaacaaacaccgcgacaagacgcgaaatcaa-aacgccgcacaagacga 15489  T
Q  220 agaacaatacaacgccacactcagacgatgaaatcac 256  Q
     |||||| ||||| || |||| ||| || ||||||||    
T  15488 cgaacaacacaacaccgcacttagatgacgaaatcac 15452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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