View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_12 (Length: 306)
Name: NF1468_low_12
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 9335606 - 9335420
Alignment:
| Q |
33 |
ttgtttcattatatgtgttgaagttgatctttagtctttctcctaattatttggcatgttcgttgaattcattccctgtcatatttcaactagttttgca |
132 |
Q |
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| T |
9335606 |
ttgtttcattatatgtgttgaagttgatcttaagtgtttctcctaattatttggcatgtcagttgaattcattccctgtcatatttcaacttgttttgca |
9335507 |
T |
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| Q |
133 |
gttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttgaattgaga |
219 |
Q |
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| T |
9335506 |
gttagagcaaatcactttagtttaagaaactgaccaaatggtatcagtgtcatctaaaaatgttcctttctatcttttgaattgaga |
9335420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 9405864 - 9405755
Alignment:
| Q |
113 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttg |
211 |
Q |
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| T |
9405864 |
atatttcaacaagtttatgcaattagagaaaataaaaataatttaagaaactggccaaatggtattagtgtctcctaaaaataatcctcgctatcttttg |
9405765 |
T |
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| Q |
212 |
aattgagatt |
221 |
Q |
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| T |
9405764 |
aattgtgatt |
9405755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 9424111 - 9424007
Alignment:
| Q |
113 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttg |
211 |
Q |
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| T |
9424111 |
atatttcaacaagtttatgcaattagagaaaataaaaataatttaagaaactggccaaatggtattagtgtctcctaaaaataatcctcgctatcttttg |
9424012 |
T |
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| Q |
212 |
aattg |
216 |
Q |
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||||| |
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| T |
9424011 |
aattg |
9424007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 9394565 - 9394470
Alignment:
| Q |
82 |
tttggcatgttcgttgaattcattccctgtcatatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtat |
176 |
Q |
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| T |
9394565 |
tttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattagaggaaatcaaaataatttaagaaactggccaaatggtat |
9394470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 9696977 - 9697026
Alignment:
| Q |
113 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaa |
161 |
Q |
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| T |
9696977 |
atatttcaactagcttatgcagttagagcaaatcaaaatagtttaagaaa |
9697026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 4426746 - 4426670
Alignment:
| Q |
132 |
agttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttt |
209 |
Q |
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||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||| | ||||||||| |||| |||||||| |
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| T |
4426746 |
agttaaagcaaatcaaaatagttta-gaaactggccaaatggtatcagtgtcccttaaaaatgtcccttgctatcttt |
4426670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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