View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_16 (Length: 280)
Name: NF1468_low_16
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23696778 - 23697047
Alignment:
| Q |
1 |
aaattcaagataatatagcattggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtt |
100 |
Q |
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| T |
23696778 |
aaattcaagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtt |
23696877 |
T |
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| Q |
101 |
tgagatatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaa |
200 |
Q |
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| T |
23696878 |
tgagagatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattgtactgtccttttaatgattgttcagctatgttggtgaatgatgaa |
23696977 |
T |
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| Q |
201 |
gaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttcat |
270 |
Q |
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| T |
23696978 |
gaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttcat |
23697047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23694647 - 23694916
Alignment:
| Q |
1 |
aaattcaagataatatagcattggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtt |
100 |
Q |
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| T |
23694647 |
aaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttaccaaaggatgtgtt |
23694746 |
T |
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| Q |
101 |
tgagatatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaa |
200 |
Q |
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| T |
23694747 |
tgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaa |
23694846 |
T |
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| Q |
201 |
gaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttcat |
270 |
Q |
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| T |
23694847 |
aagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcat |
23694916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 23701133 - 23700885
Alignment:
| Q |
22 |
tggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtttgagatatggggaaaggcact |
121 |
Q |
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| T |
23701133 |
tggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgttgttcaattttaccaaaggatgtgtttgatagatgggaaaattcact |
23701034 |
T |
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| Q |
122 |
ttgtgagaatatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttct |
221 |
Q |
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| T |
23701033 |
ttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcg |
23700934 |
T |
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| Q |
222 |
gagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttcat |
270 |
Q |
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| T |
23700933 |
gaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcat |
23700885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 8149144 - 8149038
Alignment:
| Q |
154 |
tttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgc |
253 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||| | | |||||||| | || | || ||||| |||||| ||||| |||| || || |
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| T |
8149144 |
tttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactattctgcgc |
8149045 |
T |
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| Q |
254 |
acaatgt |
260 |
Q |
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||||||| |
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| T |
8149044 |
acaatgt |
8149038 |
T |
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