View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_2 (Length: 470)
Name: NF1468_low_2
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 6987477 - 6987283
Alignment:
| Q |
19 |
ccaattatggtaataaggaaaagaaggagaagaagaacgaccaaggttaagacaatcagaagaatgagtagtatgagtaagaggtgaaagaggagaagaa |
118 |
Q |
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| T |
6987477 |
ccaattatggtaataaggaaaagaaggagaagaagaacgaccaaggttaagacaatcagaagaatgagtagtatgagttagaggtgaaagaggagaagaa |
6987378 |
T |
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| Q |
119 |
tccatgccagggaagttatgagcgccatgaggtgacaaaagggtcgctggatcggtgataccaccacgccattgaaggatgaaagcaatggtagc |
213 |
Q |
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| T |
6987377 |
tccatgccagggaagttatgagcgccatgaggtgacaaaagggtcgctggatcggtgataccaccacgcctttgaaggatgaaagcaatggtagc |
6987283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 317 - 452
Target Start/End: Complemental strand, 6987170 - 6987035
Alignment:
| Q |
317 |
attggcatggcggtggttgaaggaagttacacacgcaacagcaatgagtgctgtgttgtgtgatagtgaagagagtgaaaatgaatcatggagtgatttg |
416 |
Q |
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| T |
6987170 |
attggcatggcggtggttgaaggaagttacacacgcaacagcaatgagtgctgtgttgtgtgatagtgaagagagtgaaaatgaatcatggagtgatttg |
6987071 |
T |
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| Q |
417 |
agtcatatgtgttttacttctttcattttccttttt |
452 |
Q |
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| T |
6987070 |
agtcatatgtgttttacttctttcattttccttttt |
6987035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 3627058 - 3626996
Alignment:
| Q |
24 |
tatggtaataaggaaaagaaggagaagaagaacgaccaaggttaagacaatcagaagaatgag |
86 |
Q |
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| T |
3627058 |
tatgataataaggaaaagaaagagaataagagcaaccaaggtgaagacaagcagaagaatgag |
3626996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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