View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_20 (Length: 271)
Name: NF1468_low_20
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 23522798 - 23522709
Alignment:
| Q |
80 |
tggtttgtatttcaatacatatgatttattatgcatgtttataaaccacccttgccaccaaaattgtcataagcaacaacaatcaatgaagt |
171 |
Q |
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| T |
23522798 |
tggtttgtatttcaacacat--gatttattatgcatgtttataaaccacccttgccaccaaaattgtcataagcaacaacaatcaatgaagt |
23522709 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 23522709 - 23522654
Alignment:
| Q |
198 |
tataaaacacagcagagcaaatacatgtataattcaaacttcattctagcaagtgc |
253 |
Q |
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| T |
23522709 |
tataaaacaaagcagagcaaatacatgtataattccaacttcattctggcaagtgc |
23522654 |
T |
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