View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1468_low_24 (Length: 255)
Name: NF1468_low_24
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_24 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30212190 - 30211936
Alignment:
| Q |
1 |
tgacttacttaactaaatatgaattgattttttattactactattattgttatatttgaaatgtgaatcatatacggttagattctttagaataattact |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
30212190 |
tgacttacttaactaaatataaattgattttttattactactattattgttatatttgaaatttgaatcatatacagttagatcctttagaataattact |
30212091 |
T |
|
| Q |
101 |
agaatcactcgaaacaagttcaaaataatactacttctgaaaactgtcatatatagagtattcaagaagtcgtttaaggcaagcaattactgattcttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30212090 |
agaatcactcgaaacaagttcaaaataatactacttctgaaaactgtcatataaagagtgttcaagaagtcgtttaaggcaagtaattactgattcttca |
30211991 |
T |
|
| Q |
201 |
acgccaaatattcagattcaaataagatacttggagaggaagttccttggaagtt |
255 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30211990 |
acgccaaatattcagatgcaaataagaaacttggagaggaagttccttggaagtt |
30211936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University