View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1468_low_28 (Length: 248)

Name: NF1468_low_28
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1468_low_28
NF1468_low_28
[»] chr3 (4 HSPs)
chr3 (96-199)||(38511214-38511318)
chr3 (142-202)||(46835555-46835615)
chr3 (123-198)||(45640689-45640764)
chr3 (123-193)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (138-198)||(44621419-44621479)
chr1 (122-194)||(47932414-47932486)
[»] chr6 (2 HSPs)
chr6 (122-193)||(9852104-9852175)
chr6 (25-63)||(1954465-1954503)
[»] chr5 (1 HSPs)
chr5 (138-197)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (138-198)||(26000017-26000077)
chr7 (121-196)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (123-193)||(24538238-24538308)
chr2 (123-190)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (123-202)||(30850194-30850273)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 38511214 - 38511318
Alignment:
Q  96 tagattgaaatcaaaggccaccatacattggagccaaaaag-attaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 194  Q
    |||||||||||||| |||||||| ||||||| ||| ||||  ||||||||||| |||  || ||||| ||||||||||||||| ||||| |||||||||     
T  38511214 tagattgaaatcaacggccaccaaacattggcgcccaaaatcattaggattagagtttgcaaattttgttaaaagtgttattcatattaaaaataagtat 38511313  T
Q  195 gatat 199  Q
    |||||    
T  38511314 gatat 38511318  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 46835555 - 46835615
Alignment:
Q  142 gattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 202  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||| ||||||||    
T  46835555 gattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 45640689 - 45640764
Alignment:
Q  123 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 198  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||  ||||| | |||| |||||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagata 45640764  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 51646956 - 51646886
Alignment:
Q  123 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 193  Q
    ||||||||||||| || | ||||||||||||||||  || |||| | |||||||| ||||| |||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagta 51646886  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 44621419 - 44621479
Alignment:
Q  138 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 198  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  44621419 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagata 44621479  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 47932486 - 47932414
Alignment:
Q  122 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 194  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||||| || |||||||    
T  47932486 attggagccaaaaagattaggattagagttgacacaatttcttaacattgttattagtattagaattaagtaa 47932414  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 9852175 - 9852104
Alignment:
Q  122 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 193  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||  |||||||||| ||||| |||||||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagta 9852104  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 1954503 - 1954465
Alignment:
Q  25 taagtataattactagacaaaattagatagacctagata 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1954503 taagtataattactagacaaaattagatagacctagata 1954465  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 34509399 - 34509458
Alignment:
Q  138 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagat 197  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||    
T  34509399 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagat 34509458  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 26000077 - 26000017
Alignment:
Q  138 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 198  Q
    ||||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||||||||    
T  26000077 ttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 44111456 - 44111380
Alignment:
Q  121 cattggagccaaaaagat-taggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaaga 196  Q
    |||||| |||||| |||| ||| |||||||||||||  ||||||||| | ||||||| |||||  ||||||||||||    
T  44111456 cattggtgccaaagagatgtagaattagggttgacaatttttcttaacattgttattagtattggaaataagtaaga 44111380  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 24538308 - 24538238
Alignment:
Q  123 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 193  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagta 24538238  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 32277112 - 32277045
Alignment:
Q  123 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataa 190  Q
    |||| |||||||  ||||||||||||||||||||||||| |||| | ||||||| |||||| ||||||    
T  32277112 ttggcgccaaaataattaggattagggttgacacatttttttaacattgttattagtattagaaataa 32277045  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  123 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 202  Q
    ||||||||||||  |||| ||||||||||| |||| ||| |||  |||||||||| ||||| ||||||||| ||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

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