View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_29 (Length: 247)
Name: NF1468_low_29
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 16470117 - 16469888
Alignment:
| Q |
4 |
atgtcgaagaatataaccaaatgggattgggccctcgaaagcatttgaagtgcctcatattactaatgtaataccagttatatctcatgcagaacatgtc |
103 |
Q |
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| T |
16470117 |
atgtcgaaaaacataaccaaatgggattgggccctcgaaagcatttgaagtacctcatattactaatataataccagttatatctcatgcagaacatgtc |
16470018 |
T |
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| Q |
104 |
gttcctagtgcagatcaagatgttaaaatcatcacacctatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcct |
203 |
Q |
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| T |
16470017 |
gtccctagtgcagatcaagatgttacaatcatcacacctatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcct |
16469918 |
T |
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| Q |
204 |
ctcaga----taactcgtattgaacagcct |
229 |
Q |
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| T |
16469917 |
ctcagataattaactcgtattgaacagcct |
16469888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 27521132 - 27521215
Alignment:
| Q |
142 |
tatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataactcgtattgaaca |
225 |
Q |
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| T |
27521132 |
tatataaccatcattgcaataaggtacaaaaggtcagaccatatcatatgaacttgttgcctcttggatagctcgtattgaaca |
27521215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 6071648 - 6071579
Alignment:
| Q |
153 |
cattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataactcgtattga |
222 |
Q |
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| T |
6071648 |
cattgcaacaaggtacaaaaggtcacactgtatcatatgaacacgttgcctcccaaatagctcgtcttga |
6071579 |
T |
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