View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_3 (Length: 459)
Name: NF1468_low_3
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 36251816 - 36252243
Alignment:
| Q |
19 |
gttttggtgccattaatctttcaaaaattaaggcaagcagaaacccctcttatttactctttacaccatgcatttctgtaaccactgttaaattgatcac |
118 |
Q |
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| T |
36251816 |
gttttggtgccattaatctttcaaaaattaaggcaagcagaatcccctcttatttactctttacaccatgcatttctgtaaccactgttaaattgatcac |
36251915 |
T |
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| Q |
119 |
atatttgtcgtatattcacatcaagcagagattggtttatggagccaaagcagaagctgcagtagcaattggatttgacagttttatcgccgatgcacag |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36251916 |
atatttgtcgcatattcacatcaagcagagattggtttatggagccaaagcagaagctgcagtagcaattggatttgacagttttatcgccgatgcacag |
36252015 |
T |
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| Q |
219 |
aagggaggtgattctcgtcagaaggcccagttggagataaaaaagatagatggtaatgctgctgcaattgcagaacaagtatttgagaaaacaaagggaa |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36252016 |
aagggaagtgattctcgtcagaaggcccagttggagataaaaaagatagatggtaatgctgctgcaatttcagaacaagtatttgagaaaacaaagggaa |
36252115 |
T |
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| Q |
319 |
agtacattctttactgatttggttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaagtctataaaacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36252116 |
agtacattctttactgatttggttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaagtctataaaacc |
36252215 |
T |
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| Q |
419 |
tgtttctatcaattcacatatttatttt |
446 |
Q |
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| T |
36252216 |
tgtttctatcaattcgcatatttatttt |
36252243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 36235217 - 36235297
Alignment:
| Q |
114 |
atcacatatttgtcgtatattcacatcaagcagagattggtttatggagccaaagcagaagctgcagtagcaattggattt |
194 |
Q |
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| T |
36235217 |
atcacatatttgtcttatattcacatcaagcagagaatggtttatggagccacagcagaagctgcaagatcaattggattt |
36235297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 36225705 - 36225615
Alignment:
| Q |
104 |
tgttaaattgatcacatatttgtcgtatattcacatcaagcagagattggtttatggagccaaagcagaagctgcagtagcaattggattt |
194 |
Q |
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| T |
36225705 |
tgttaaattgatcacatatttgtcttatattcgcatcaagcagagaatggtttatggagcctcagcagaagtggcaggatcaattggattt |
36225615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 36235332 - 36235400
Alignment:
| Q |
247 |
agttggagataaaaaagatagatggtaatgctgctgcaattgcagaacaagtatttgagaaaacaaagg |
315 |
Q |
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| T |
36235332 |
agttcgagataaaaaagatagatggtattgctgctgaaattgcagaagaagtttttgagaagacaaagg |
36235400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 36225504 - 36225439
Alignment:
| Q |
341 |
ttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaa |
406 |
Q |
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||||||||| | ||||||||| |||||||||||| |||||||||||||| || ||| ||||||||| |
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| T |
36225504 |
ttaaccatcatggtaaaagagtatacaagttacacttgttcaggaaaatccagtttactatcagaa |
36225439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 36225575 - 36225514
Alignment:
| Q |
252 |
gagataaaaaagatagatggtaatgctgctgcaattgcagaacaagtatttgagaaaacaaa |
313 |
Q |
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||||| |||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||| |
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| T |
36225575 |
gagatcaaaaagatagatggtattgctgctgaaattgcagaagaagtgtttgagaagacaaa |
36225514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 36235431 - 36235496
Alignment:
| Q |
340 |
gttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaa |
406 |
Q |
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| T |
36235431 |
gttaaccatcatggtaaaagagtacacaagttacacttgttcagg-aaattcaatttcttatcagaa |
36235496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 367031 - 366966
Alignment:
| Q |
254 |
gataaaaaagatagatggtaatgctgctgcaattgcagaacaagtatttgagaaaacaaagggaaa |
319 |
Q |
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||||||||| ||||| || |||||||||| |||||||||||| ||||||||||| | ||||||||| |
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| T |
367031 |
gataaaaaaaatagacggcaatgctgctgaaattgcagaacaggtatttgagaagaaaaagggaaa |
366966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 367092 - 367035
Alignment:
| Q |
145 |
agagattggtttatggagccaaagcagaagctgcagtagcaattggatttgacagttt |
202 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||| |
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| T |
367092 |
agagattggtttatggagccaaatatgaagttgcaggggcaattggatttgatagttt |
367035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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