View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_30 (Length: 246)
Name: NF1468_low_30
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 30509651 - 30509439
Alignment:
| Q |
16 |
atgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
115 |
Q |
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| T |
30509651 |
atgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
30509552 |
T |
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| Q |
116 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactggactgttcaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30509551 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgggactggactgttcaggtt |
30509452 |
T |
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| Q |
216 |
tgctaggggatat |
228 |
Q |
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||||||||||||| |
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| T |
30509451 |
tgctaggggatat |
30509439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 10970956 - 10971168
Alignment:
| Q |
16 |
atgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10970956 |
atgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagg |
10971055 |
T |
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| Q |
116 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactggactgttcaggtt |
215 |
Q |
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| T |
10971056 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatggcaatagttggtgggactggactgttcaggtt |
10971155 |
T |
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| Q |
216 |
tgctaggggatat |
228 |
Q |
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| T |
10971156 |
tgctaggggatat |
10971168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 13703005 - 13702944
Alignment:
| Q |
142 |
atgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactgg |
203 |
Q |
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| T |
13703005 |
atgttgggaaggaatcctatttctgaacaaaatagagaaatgcctattgttggtggaactgg |
13702944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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