View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_32 (Length: 239)
Name: NF1468_low_32
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42845295 - 42845517
Alignment:
| Q |
1 |
attatgcagaagtggaagatcagctaagcacagctgaatacaatttttccaacagaacttcattcggtaagcttttaggaatgataagttcgacccagtt |
100 |
Q |
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| T |
42845295 |
attatgcagaagtggaagatcagctaagcacagctgaatacaatttttccaacagaacttcattcggtaaacttttaggaatgacaagttcgacccagtt |
42845394 |
T |
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| Q |
101 |
acaagaagt--caactgtaagataagcaatccaacagagaattttaaagattcatatggtcaatccttagaagtaatcatgacgcgatgcaatgattgta |
198 |
Q |
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| T |
42845395 |
acaagaagtgtcaactgtaagataagcaatctaacagagaattttaaagattcatatggtcaatccttagaagtaatcatgacgcaatgcaatgattgta |
42845494 |
T |
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| Q |
199 |
atttgaaaatgacccctaactct |
221 |
Q |
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| T |
42845495 |
atttgaaaatgacccctaactct |
42845517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 41979256 - 41979412
Alignment:
| Q |
7 |
cagaagtggaagatcagctaagcacagctgaatacaatttttccaacagaacttcattcggtaagcttttaggaatgataagttcgacccagttacaaga |
106 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||||||||||||||| || |
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| T |
41979256 |
cagaagtagaagatcggttaagcacagctgaatacaatttttccaacaggacttctttcagtaagcttttaggaatggcaaattcgacccagttacatga |
41979355 |
T |
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| Q |
107 |
agtcaactgtaagataagcaatccaacagagaattttaaagattcatatggtcaatc |
163 |
Q |
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| T |
41979356 |
agttaacagtcagagaagcaatccaactgagaatttgagagatttatatggtcaatc |
41979412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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