View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_33 (Length: 238)
Name: NF1468_low_33
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_33 |
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| [»] scaffold0468 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3191992 - 3192197
Alignment:
| Q |
1 |
acttgcatgataggtttccaacaacattatttcaattccacttgttagaaaa-aatatattttctaatgtcgcaataaaaaagaacattattcaaggtat |
99 |
Q |
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| T |
3191992 |
acttgcatgataggtttccaacaacattatttcaattccacttgttagaaaaaaatatattttctaatgtcccaataaaaaagaacattattcaaggtat |
3192091 |
T |
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| Q |
100 |
atccttatttgtatttcacccccattttaaaacaaactaacnnnnnnnccttgcaaattacatgctcaagaggtgtatatgtgtatactttgtcttttca |
199 |
Q |
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| T |
3192092 |
atccttatttgtattttacccccattttaaaacaaactaacaaaaaaaccttgcagattacatgctcaagatgtgtgtatatgtatactttgtgttttca |
3192191 |
T |
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| Q |
200 |
ttcaaa |
205 |
Q |
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|||||| |
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| T |
3192192 |
ttcaaa |
3192197 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 3196263 - 3196319
Alignment:
| Q |
58 |
attttctaatgtcgcaataaaaaagaacattattcaaggtatatccttatttgtatt |
114 |
Q |
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| T |
3196263 |
attttccaatgtcccaataaaaaagaacattattcaaggtacatccttgtttgtatt |
3196319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 11037 - 11088
Alignment:
| Q |
154 |
aaattacatgctcaagaggtgtatatgtgtatactttgtcttttcattcaaa |
205 |
Q |
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| T |
11037 |
aaattacatgctcaagatgtgtatatatgtatactttgtgttttcactcaaa |
11088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 17856529 - 17856573
Alignment:
| Q |
154 |
aaattacatgctcaagaggtgtatatgtgtatactttgtcttttc |
198 |
Q |
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| T |
17856529 |
aaattacatgctcaagatgtgtatatatgtatactttgtgttttc |
17856573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 11155 - 11117
Alignment:
| Q |
154 |
aaattacatgctcaagaggtgtatatgtgtatactttgt |
192 |
Q |
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| T |
11155 |
aaattacatgctcaagatgtgtatatatgtatactttgt |
11117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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