View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1468_low_34 (Length: 236)
Name: NF1468_low_34
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 40473613 - 40473819
Alignment:
| Q |
1 |
tgactccccatggagttggagcctggttttgatcaagtctatggggaaagttgtggactcggccaccattgccgataatgatgttagtaaaatctttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40473613 |
tgactccccatggagttggagcctggttttgatcaagtctatgggaaaagttgtggactcggccaccattgccgataatgatgttagcaaaatctttgta |
40473712 |
T |
|
| Q |
101 |
tgagtattgtcaacttcattgcctgatttcattggtacatacaagaaaacccaactcgccaaaataaaatatgcacggggctggctggctggctattcta |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40473713 |
tgagtattgtcaacttgattgcctgatttcattggtacatacaagaaaacccaactcgccaaaataaaatatgcacggggctggctggctggctattcta |
40473812 |
T |
|
| Q |
201 |
atacaat |
207 |
Q |
| |
|
| ||||| |
|
|
| T |
40473813 |
agacaat |
40473819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University