View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_5 (Length: 414)
Name: NF1468_low_5
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 100 - 403
Target Start/End: Original strand, 46262600 - 46262903
Alignment:
| Q |
100 |
tttcataatcttcacccatgttattttgttggaaagaatgtcttttgcatatcaaattcattcgaagatataaggaaattccactaattcataataaaga |
199 |
Q |
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| T |
46262600 |
tttcataatcttcagccatgttattatgttggaaagaatgtcttttgcatatcaaattcattcgaagatataaggaaattccactaattcataataaaga |
46262699 |
T |
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| Q |
200 |
tctataagttggtctatgtgataaggaattatttttgataaacaacaccatatttatcagagtatttccgtggcaaagcatgaaatattgttacattttt |
299 |
Q |
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| T |
46262700 |
tctataagttggtctatgtgataaggaattatttttgataaacaacaccatatttatcagagtatttccgtggcaaagcatgaaatattgttacattttt |
46262799 |
T |
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| Q |
300 |
tcatggctagacatgtaaaaattattttagcatatgcaatataatcaaaatggaggcaaaggaaagccaaaaaattaaagagcagaagcacaaaccttgt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262800 |
tcatggctagacatgtaaaaattattttagcatatgcaatataatcaaaatggaggcaaaggaaagccaaaaaattaaagagcagaagcacaaaccttgt |
46262899 |
T |
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| Q |
400 |
tcat |
403 |
Q |
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|||| |
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| T |
46262900 |
tcat |
46262903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 46262516 - 46262554
Alignment:
| Q |
16 |
acataaaactctctgaaacatgccaagtaactttgaccc |
54 |
Q |
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| T |
46262516 |
acataaaactctctgaaacatgccaagtaactttgaccc |
46262554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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