View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_6 (Length: 396)
Name: NF1468_low_6
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 58 - 393
Target Start/End: Original strand, 25491964 - 25492301
Alignment:
| Q |
58 |
tgtaacaaattcggtaaaagaataacagtgttagcattt-aaaatgtataaatgacaattaaaaaag--taaagtactattatgtctttttattatttta |
154 |
Q |
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| T |
25491964 |
tgtaacaaattcagtaaaagaattacagtgttaacattttaaaatgta-aaataacagttaaaaaagagttaagtactattatgtctttttattgtttta |
25492062 |
T |
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| Q |
155 |
tcttctttttaacaggaacctcgtcactttcggtgtggcttcgacattgttattccttggcttggacctggt-att--ttgtactatttataccagctca |
251 |
Q |
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| T |
25492063 |
tcttctttttaacaggaacctcgtcactttcggtgtggctttgacattgttattccttggcttggacatgattattatttggggaactt---caatttca |
25492159 |
T |
|
| Q |
252 |
agtttaaagggggtttgaatatagtaaggatagagaactcttttagccttatggattgtgtcgggtgtctcttttatgtaaagtttgaagtaaataattg |
351 |
Q |
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| T |
25492160 |
agtttaaagggggtttggatatagtaaggatagagaactcttttagccttatggattgtgtcgggtgtctcttttttgtaaagtttgaagtaaataattg |
25492259 |
T |
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| Q |
352 |
tcatgaagtgtctggttctccacttggatcgttctctgctcc |
393 |
Q |
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| T |
25492260 |
tcatgaagtgtctggttctccacttggatcgttctcttctcc |
25492301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 25641883 - 25641928
Alignment:
| Q |
167 |
caggaacctcgtcactttcggtgtggcttcgacattgttattcctt |
212 |
Q |
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| T |
25641883 |
caggaacctcgtcacttccgatgtggctttgacattattattcctt |
25641928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 25491858 - 25491890
Alignment:
| Q |
15 |
aaaattttcactcagttccttaatttcaagaaa |
47 |
Q |
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| T |
25491858 |
aaaattttcacgcagttccttaatttcaagaaa |
25491890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 495812 - 495767
Alignment:
| Q |
167 |
caggaacctcgtcactttcggtgtggcttcgacattgttattcctt |
212 |
Q |
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| T |
495812 |
caggaacctcgtcacttccgatgtggctttgacattgttcttcctt |
495767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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