View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1468_low_8 (Length: 363)

Name: NF1468_low_8
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1468_low_8
NF1468_low_8
[»] chr4 (5 HSPs)
chr4 (1-352)||(48912107-48912458)
chr4 (1-341)||(48958210-48958550)
chr4 (4-352)||(48965398-48965743)
chr4 (1-209)||(48961359-48961567)
chr4 (103-230)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-338)||(6287-6624)
scaffold0536 (1-352)||(10257-10606)
[»] chr6 (2 HSPs)
chr6 (4-341)||(12589942-12590282)
chr6 (101-341)||(12483237-12483477)
[»] chr2 (3 HSPs)
chr2 (7-250)||(13448435-13448675)
chr2 (101-288)||(13440363-13440550)
chr2 (7-191)||(13454906-13455087)
[»] chr7 (1 HSPs)
chr7 (3-310)||(3417334-3417638)
[»] chr5 (2 HSPs)
chr5 (87-288)||(28385483-28385684)
chr5 (3-293)||(12540753-12541040)
[»] chr8 (1 HSPs)
chr8 (2-242)||(12641353-12641593)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 48912458 - 48912107
Alignment:
Q  1 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912458 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 48912359  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48912358 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 48912259  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48912258 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 48912159  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912158 ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 48912107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 48958210 - 48958550
Alignment:
Q  1 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 100  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| ||| |||| |||| | | ||||||||||| ||      
T  48958210 cacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgt 48958309  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    |||||||||| || || || |||||||| ||| |||||||||||||| | || |  ||  ||| |||||| ||||||||||||||||  ||||||||||     
T  48958310 ttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaacccatacaaattcgtgacc 48958409  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
     |||||||| ||||| |||||||||||||||||||||||||| || |||| ||||  |||||||||||||||||||| ||| ||||||| |   ||| ||    
T  48958410 tgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttatgtctcttcaag 48958509  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacactctc 341  Q
    || |||||||||| |||  | |||||||| |||||| ||||    
T  48958510 ttgagccaactcagacaaccatgcacactaacaacattctc 48958550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 48965398 - 48965743
Alignment:
Q  4 ccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattc 103  Q
    |||||||| |||||||| |||||||| || | |||||||||||||| |||||| |||||||||||| ||||||||| | |   ||||||||| ||  |||    
T  48965398 ccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttctttccaatgtttc 48965494  T
Q  104 tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcga 203  Q
    ||||||| || |||||||| ||||| ||||  |||||||||||| | |||| |||  |||  || ||    |||| ||||||||| || || |||| |||    
T  48965495 tctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatcatgacccga 48965594  T
Q  204 tgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagtta 303  Q
    |||||| ||  | ||||||||||||||||| |||||||||  | || ||||  |||||||||||| |||||||| ||| ||||||| | | || || ||     
T  48965595 tgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagttatgtcgcttggaattg 48965694  T
Q  304 agccaactcaaacactcgtgcacactcacaacactctcttctcctctct 352  Q
    ||||||||||||||||| ||||| |||||  ||||||||| ||| ||||    
T  48965695 agccaactcaaacactcttgcacgctcactgcactctcttgtcccctct 48965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 48961359 - 48961567
Alignment:
Q  1 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 100  Q
    ||||| ||||| ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | ||      
T  48961359 cacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgt 48961458  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    ||||||||||||| || || |||||||| || ||||||||||||||  | |||| | |  ||| ||| || ||||||||||||||||  ||||||||||     
T  48961459 ttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttcccttttttctcaggaacaacccatacaaattcgtgacc 48961558  T
Q  201 cgatgcttc 209  Q
    |||||||||    
T  48961559 cgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
Q  103 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 202  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  203 atgcttcaatcccgcacgcaatctcata 230  Q
    || |||| ||| |||  |||||||||||    
T  48951499 attcttctatcgcgcttgcaatctcata 48951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 6624 - 6287
Alignment:
Q  1 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 100  Q
    ||||||||||| |||||||| |||||||  ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||     
T  6624 cacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatat 6525  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    |||||||||| || |||||||||||||||||| |||||||||||||| | ||||  ||  ||| |||||| |||||||||||||||||||||| |||||     
T  6524 ttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttcttctcaggaacaacccatatgaatttgtgacc 6425  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||||| ||| ||||||||| | ||||||    
T  6424 cgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagttatctggcttcgag 6325  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacact 338  Q
    |  |||||||||| |||||| |||||||||||||||||    
T  6324 tctagccaactcagacactcatgcacactcacaacact 6287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 10606 - 10257
Alignment:
Q  1 cacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataa 100  Q
    |||||||||||||||||||| ||||||||  | |||||||| |||||||||||||| || ||||||||||||||||||| | ||||||||||| | ||||    
T  10606 cacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataa 10507  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
     ||| |||||||| || || || | |||||||||||||||||||| | | |||| |||  ||| |||||| ||||||||||| ||||  ||||||| ||     
T  10506 ctctttcttcaaatcctttcggtagccatttttctttctcctcttgactctcattctctttccctttcttctcaggaacaactcatacaaattcgtaacc 10407  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
    ||||||||| | || ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| ||| ||  ||||| | ||| ||    
T  10406 cgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaag 10309  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 352  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  10308 ttaagccaactcagacactcatgcacactcacaacactctgttctcctctct 10257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 12590282 - 12589942
Alignment:
Q  4 ccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttc---cgataa 100  Q
    ||||||||||||||||| || ||||| ||  ||||||||| |||||| || ||||| ||||||||| |||| |||| | ||||||||||||   | ||      
T  12590282 ccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgt 12590183  T
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | ||||  ||| ||| ||| || || |||| |||||||| ||||||||| |     
T  12590182 ttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgggaataacccatacgaattcgtggcc 12590083  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
     |||||||| || || |||| ||||||||||||||||||||| || ||||  |||  ||| |||||||||||||||| ||| ||||||||| | ||||||    
T  12590082 tgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgag 12589983  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacactctc 341  Q
    || |||||||||| |||||| |||||  |||||||||||||    
T  12589982 tttagccaactcagacactcttgcacgttcacaacactctc 12589942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 101 - 341
Target Start/End: Complemental strand, 12483477 - 12483237
Alignment:
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||||  | ||     
T  12483477 ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc 12483378  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 300  Q
    ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || ||||| || |||    
T  12483377 cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag 12483278  T
Q  301 ttaagccaactcaaacactcgtgcacactcacaacactctc 341  Q
    || ||||||||   |||||| ||||| ||||||||||||||    
T  12483277 tttagccaactttgacactcatgcacgctcacaacactctc 12483237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 13448435 - 13448675
Alignment:
Q  7 caatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctct 106  Q
    ||||| ||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||    
T  13448435 caatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctct 13448531  T
Q  107 cttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgc 206  Q
    ||||||| ||||| || ||||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||||||||  |||||  |||||    
T  13448532 cttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgc 13448631  T
Q  207 ttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 250  Q
    ||| ||| | || || ||||| || ||||||||||| |||||||    
T  13448632 ttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 288
Target Start/End: Original strand, 13440363 - 13440550
Alignment:
Q  101 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 200  Q
    |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  ||||||    
T  13440363 ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact 13440462  T
Q  201 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 288  Q
     |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| ||||||||||    
T  13440463 agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagtta 13440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 13454906 - 13455087
Alignment:
Q  7 caatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctct 106  Q
    ||||| ||||||||| | ||||| || | ||| ||||  ||| |||| ||||| ||||||||| |||| |||| | |||| ||||   ||||  || |||    
T  13454906 caatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cgatgtttttct 13455002  T
Q  107 cttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 191  Q
    ||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13455003 cttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 3417638 - 3417334
Alignment:
Q  3 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataatt 102  Q
    ||||||||||||||||||| | || || || | ||||||||  |||  ||||||||| ||||||||| |||  |||| | |   ||||||||| ||  ||    
T  3417638 cccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctttccaatgttt 3417542  T
Q  103 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 202  Q
    ||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||||||||  ||||| ||    
T  3417541 ctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccatatgaatgggtgacccg 3417442  T
Q  203 atgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagtt 302  Q
    ||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| |||||| ||||||  |||||    
T  3417441 atgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagttaacttgttgtgagtt 3417342  T
Q  303 aagccaac 310  Q
     |||||||    
T  3417341 gagccaac 3417334  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 288
Target Start/End: Original strand, 28385483 - 28385684
Alignment:
Q  87 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 186  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  187 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 286  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  287 ta 288  Q
    ||    
T  28385683 ta 28385684  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 293
Target Start/End: Original strand, 12540753 - 12541040
Alignment:
Q  3 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataatt 102  Q
    ||||||||||||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| |||| | |   ||| ||||| ||  ||    
T  12540753 cccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgttt 12540849  T
Q  103 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 202  Q
    ||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  ||||| |     
T  12540850 ctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgaccca 12540949  T
Q  203 atgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttg 293  Q
     | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| ||||    
T  12540950 ttccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttg 12541040  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 12641593 - 12641353
Alignment:
Q  2 acccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataat 101  Q
    |||| ||||| ||||| ||||||||||| || | |||||| | |||||| || ||||| |||||  || |||| || | | | ||||| ||| | | | |    
T  12641593 acccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatt 12641494  T
Q  102 tctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactc 201  Q
    ||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||      
T  12641493 tctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacct 12641394  T
Q  202 gatgcttcaatcccgcacgcaatctcataaagttgtttatc 242  Q
    ||   ||| || |||| ||||||||| ||||||||||||||    
T  12641393 gaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

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