View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1468_low_9 (Length: 343)
Name: NF1468_low_9
Description: NF1468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1468_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 38483268 - 38482952
Alignment:
| Q |
12 |
acagaggcatcgagggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttcccgttggttgcggacat |
111 |
Q |
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| T |
38483268 |
acagaggcatcgagggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttctcgttggttgcggacat |
38483169 |
T |
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| Q |
112 |
tgtctgtctggaagccgaaaaagagggctagccaatttaggaggtcgtagtgtggttgccatttgggaggaaggtggaggtcaccgacggtgttgagggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483168 |
tgtctgtctggaagccgaaaaagagggctagccaatctaggaggtcgtagtgtggttgccatttgggaggaaggtggaggtcaccgacggtgttgagggc |
38483069 |
T |
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| Q |
212 |
ggagaaggcagcgcggatttcggggaagcggagggaggggtggtcagtgttgagggagttgtggagtgggaggatgttgtagggcttggccgcgaccgag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38483068 |
ggagaaggcagcgcggatttcggggaagcggagggaagggtggtcagtggtgagggagttgtggagtgggaggatgttgtagggcttggccgcgacggag |
38482969 |
T |
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| Q |
312 |
gtggtgcgagtggttgg |
328 |
Q |
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| T |
38482968 |
gtggtgcgagtggttgg |
38482952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 30117655 - 30117522
Alignment:
| Q |
12 |
acagaggcatcgagggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttcccgttggttgcggacat |
111 |
Q |
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|||| ||| ||||| | ||||||||| || || || ||| ||||||||||||||||||||||||| || || | | ||| |||||||| || ||||| | |
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| T |
30117655 |
acagcggcgtcgagagtatcgatgttatccggcggcggagtgagacgcatctgagcattggcgaggtgaagaacaagatgctcccgttgattacggacgt |
30117556 |
T |
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| Q |
112 |
tgtctgtctggaagccgaaaaagagggctagcca |
145 |
Q |
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| T |
30117555 |
tgtctttctgaaagccgaagaagagagcgagcca |
30117522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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