View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14690_low_1 (Length: 384)
Name: NF14690_low_1
Description: NF14690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14690_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 191 - 366
Target Start/End: Complemental strand, 41343118 - 41342942
Alignment:
| Q |
191 |
gctaaagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
290 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41343118 |
gctatagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
41343019 |
T |
|
| Q |
291 |
t-aaatcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
366 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41343018 |
taaaatcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
41342942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 41343247 - 41343105
Alignment:
| Q |
34 |
gatgtgagatgtgtggaggatcaggacttgtttttagggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgatt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41343247 |
gatgtgagatgtgtggaggatcaggacttgtttttagggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgatt |
41343148 |
T |
|
| Q |
134 |
ataagcattaatatcatcattttgatcatgctatagtgtaaaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41343147 |
ataagcattaatatcatcattttgatcatgctatagtttaaaa |
41343105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 41325634 - 41325563
Alignment:
| Q |
295 |
tcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
366 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
41325634 |
tcatatgctatcgattttaggtggatttcttccttggcagtcaaggaaaagattcttctctggttaatgtat |
41325563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 41338506 - 41338472
Alignment:
| Q |
295 |
tcatatgctatctatttcaggtggatttcttcctt |
329 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41338506 |
tcatatgctatctatctcaggtggatttcttcctt |
41338472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University