View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14690_low_2 (Length: 214)

Name: NF14690_low_2
Description: NF14690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14690_low_2
NF14690_low_2
[»] chr2 (8 HSPs)
chr2 (16-197)||(22550154-22550327)
chr2 (15-91)||(22549768-22549845)
chr2 (122-153)||(31808105-31808136)
chr2 (115-153)||(35056896-35056934)
chr2 (153-190)||(27084243-27084280)
chr2 (115-151)||(19614213-19614249)
chr2 (153-185)||(21616748-21616780)
chr2 (124-185)||(34993984-34994049)
[»] chr1 (8 HSPs)
chr1 (115-153)||(25361914-25361952)
chr1 (118-153)||(7918207-7918242)
chr1 (115-153)||(17754339-17754377)
chr1 (115-153)||(44482258-44482296)
chr1 (116-153)||(34712377-34712414)
chr1 (153-185)||(3490431-3490463)
chr1 (153-185)||(14359562-14359594)
chr1 (153-185)||(38076011-38076043)
[»] chr7 (6 HSPs)
chr7 (116-153)||(5548704-5548741)
chr7 (118-153)||(18013070-18013105)
chr7 (115-153)||(11744181-11744219)
chr7 (115-153)||(15902850-15902888)
chr7 (115-153)||(32308148-32308186)
chr7 (117-153)||(22602705-22602741)
[»] chr8 (4 HSPs)
chr8 (153-185)||(13844637-13844669)
chr8 (115-153)||(24362195-24362233)
chr8 (153-190)||(5813573-5813610)
chr8 (153-182)||(31236618-31236647)
[»] scaffold1528 (1 HSPs)
scaffold1528 (115-153)||(1063-1101)
[»] scaffold0008 (1 HSPs)
scaffold0008 (115-153)||(263365-263403)
[»] chr3 (3 HSPs)
chr3 (115-153)||(8039828-8039866)
chr3 (153-186)||(1514602-1514635)
chr3 (124-153)||(26917298-26917327)
[»] chr6 (2 HSPs)
chr6 (124-153)||(9750451-9750480)
chr6 (153-186)||(10842517-10842550)
[»] chr5 (1 HSPs)
chr5 (153-190)||(39205861-39205898)
[»] chr4 (3 HSPs)
chr4 (116-153)||(18513235-18513272)
chr4 (150-182)||(35952655-35952687)
chr4 (153-185)||(50280867-50280899)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 22550154 - 22550327
Alignment:
Q  16 aaatacatggttggaaaagggagaccccgctaaggtttcttgaccgagattaatcatttatgaagcacagacactcctcaggtgtgtccaggacacccaa 115  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||         ||||| |    
T  22550154 aaatacatgtttggaaaagggagaccccgctaaggtttctccaccgagattaatcatttatgaagcacagacactcctcaggtgg--------cacccga 22550245  T
Q  116 ccgacacaacactgacacatataattacactgaattatcaaattattagcagtgtcggcgtgtccgtgtcagtatttgagct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22550246 ccgacacaacactgacacatataattacactgaattatcaaattattagcagtgtcggcgtgtccgtgtcagtatttgagct 22550327  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 22549768 - 22549845
Alignment:
Q  15 aaaatacatggttggaaaagggagaccccgctaaggtttcttgaccgagattaatc-atttatgaagcacagacactc 91  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| || |||||||||  |||||||    
T  22549768 aaaatacatggttggaaaagggagaccccgctaagctttctcaaccgagattaatcaatctatgaagcatggacactc 22549845  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 31808136 - 31808105
Alignment:
Q  122 caacactgacacatataattacactgaattat 153  Q
    ||||||||||||||||||||||||||||||||    
T  31808136 caacactgacacatataattacactgaattat 31808105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 35056934 - 35056896
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  35056934 accgacacgacaccgacacatataattacactgaattat 35056896  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 27084280 - 27084243
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtcagtat 190  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  27084280 tcaaattattagcagtgtcggagtgtccgtgtccgtat 27084243  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 19614249 - 19614213
Alignment:
Q  115 accgacacaacactgacacatataattacactgaatt 151  Q
    |||||||| | ||||||||||||||||||||||||||    
T  19614249 accgacacgatactgacacatataattacactgaatt 19614213  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 21616780 - 21616748
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    ||||||||||||| |||||||||||||||||||    
T  21616780 tcaaattattagcggtgtcggcgtgtccgtgtc 21616748  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 34993984 - 34994049
Alignment:
Q  124 acactgacacatataattacactgaatta----tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    ||||||||||||||||||||| |||||||    ||||||||||||| |||| ||||| || |||||    
T  34993984 acactgacacatataattacattgaattatgtttcaaattattagcggtgttggcgtatcagtgtc 34994049  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 25361952 - 25361914
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  25361952 accgacacgacactgacacatataattacactgaattat 25361914  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 7918207 - 7918242
Alignment:
Q  118 gacacaacactgacacatataattacactgaattat 153  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattat 7918242  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 17754377 - 17754339
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  17754377 accgacaccacactgacacatatagttacactgaattat 17754339  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 44482296 - 44482258
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  44482296 accgacacgacaccgacacatataattacactgaattat 44482258  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 34712377 - 34712414
Alignment:
Q  116 ccgacacaacactgacacatataattacactgaattat 153  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattat 34712414  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 3490431 - 3490463
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    ||||||||||||||||||||||||||| |||||    
T  3490431 tcaaattattagcagtgtcggcgtgtcagtgtc 3490463  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 14359562 - 14359594
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    ||||||||||||| |||||||||||||||||||    
T  14359562 tcaaattattagctgtgtcggcgtgtccgtgtc 14359594  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 38076011 - 38076043
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    |||||||||||||||||||| ||||||||||||    
T  38076011 tcaaattattagcagtgtcgtcgtgtccgtgtc 38076043  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 5548741 - 5548704
Alignment:
Q  116 ccgacacaacactgacacatataattacactgaattat 153  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  5548741 ccgacacgacactgacacatataattacactgaattat 5548704  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 18013070 - 18013105
Alignment:
Q  118 gacacaacactgacacatataattacactgaattat 153  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18013070 gacacgacactgacacatataattacactgaattat 18013105  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 11744181 - 11744219
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||||| || |||||||||||||||||||||||||    
T  11744181 accgacacaatacagacacatataattacactgaattat 11744219  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 15902888 - 15902850
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  15902888 accgacacaacaccgacacatataattacactaaattat 15902850  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 32308186 - 32308148
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  32308186 accgacacgacactgacacatacaattacactgaattat 32308148  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 22602705 - 22602741
Alignment:
Q  117 cgacacaacactgacacatataattacactgaattat 153  Q
    |||||| |||| |||||||||||||||||||||||||    
T  22602705 cgacacgacaccgacacatataattacactgaattat 22602741  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 13844637 - 13844669
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    |||||||||||||||||||||||||||||||||    
T  13844637 tcaaattattagcagtgtcggcgtgtccgtgtc 13844669  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 24362195 - 24362233
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  24362195 accgacacgacattgacacatataattacactgaattat 24362233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 5813610 - 5813573
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtcagtat 190  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  5813610 tcaaattattagctgtgtcggcgtgtccgtgtccgtat 5813573  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 31236618 - 31236647
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgt 182  Q
    ||||||||||||||||||||||||||||||    
T  31236618 tcaaattattagcagtgtcggcgtgtccgt 31236647  T

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Target: scaffold1528 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 1101 - 1063
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  1101 accgacaccacactgacacatatagttacactgaattat 1063  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 263365 - 263403
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  263365 accgacacgacactgacacttataattacactgaattat 263403  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 8039828 - 8039866
Alignment:
Q  115 accgacacaacactgacacatataattacactgaattat 153  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  8039828 accgacacgacaccgacacatataattacactgaattat 8039866  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 1514635 - 1514602
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtca 186  Q
    ||||||||||||| ||||||||||||||||||||    
T  1514635 tcaaattattagcggtgtcggcgtgtccgtgtca 1514602  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 26917327 - 26917298
Alignment:
Q  124 acactgacacatataattacactgaattat 153  Q
    ||||||||||||||||||||||||||||||    
T  26917327 acactgacacatataattacactgaattat 26917298  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 9750451 - 9750480
Alignment:
Q  124 acactgacacatataattacactgaattat 153  Q
    ||||||||||||||||||||||||||||||    
T  9750451 acactgacacatataattacactgaattat 9750480  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 10842550 - 10842517
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtca 186  Q
    ||||||||||||| ||||||||||||||||||||    
T  10842550 tcaaattattagcggtgtcggcgtgtccgtgtca 10842517  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 39205898 - 39205861
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtcagtat 190  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39205898 tcaaattattagcagtgtcgacgtgtccgtgtctgtat 39205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 18513235 - 18513272
Alignment:
Q  116 ccgacacaacactgacacatataattacactgaattat 153  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattat 18513272  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 35952655 - 35952687
Alignment:
Q  150 ttatcaaattattagcagtgtcggcgtgtccgt 182  Q
    |||||||||||||||||||| ||||||||||||    
T  35952655 ttatcaaattattagcagtggcggcgtgtccgt 35952687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 50280899 - 50280867
Alignment:
Q  153 tcaaattattagcagtgtcggcgtgtccgtgtc 185  Q
    ||||||||||||| |||||||||||||||||||    
T  50280899 tcaaattattagctgtgtcggcgtgtccgtgtc 50280867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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