View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_1 (Length: 602)
Name: NF14691_high_1
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 5192465 - 5192777
Alignment:
| Q |
14 |
gcataggccagtcgttgtgtctcatgcgtaagctagaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcgtagaatcatataagttaac |
113 |
Q |
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| T |
5192465 |
gcataggccagtcgttgtgtctcatgcgtaatctaaaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcctagaatcacacaagttaac |
5192564 |
T |
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| Q |
114 |
gtcaaggttatatatagatgtcttcataaaaaatgtaggtatggatattagggattcaatggctttgatttcaaaactcaaaagaatgacaaagac--at |
211 |
Q |
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| T |
5192565 |
gtcaaggttatgtatagatgtcttcataaaaaatgtaggtatggattttagggattcaatggctttgatttcaaaactcaaaagaatgacaaagacatat |
5192664 |
T |
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| Q |
212 |
ataaaggtctaaaacaagataatatcctcaaagacaaacattaacaacaaaatgagacta---ccaatacttatttttccaaaaatacaagacatctctc |
308 |
Q |
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| T |
5192665 |
ataaaggtctaaaacaagataata-cctcaaagacaaacattaacaacaaaatgagactaccgccaatacttatttttccaaaaatacaagacatctctc |
5192763 |
T |
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| Q |
309 |
tctattggacactt |
322 |
Q |
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| T |
5192764 |
tctattggacactt |
5192777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 347 - 583
Target Start/End: Original strand, 5192790 - 5193026
Alignment:
| Q |
347 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttctatttcacagttgaatacacatgtatat |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
5192790 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttatatttcacatttgaatacacatgtatat |
5192889 |
T |
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| Q |
447 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaataacaatttccgtgagaataaa |
546 |
Q |
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| T |
5192890 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaatagcaatttccgtgagaataaa |
5192989 |
T |
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| Q |
547 |
gccactaaaagttagaactaggggaatctgtaggtta |
583 |
Q |
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| T |
5192990 |
gccactaaaagttagaactaggggaatctgtaggtta |
5193026 |
T |
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