View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_16 (Length: 284)
Name: NF14691_high_16
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 38828646 - 38828773
Alignment:
| Q |
3 |
atgacgggatggaagaaataattagactaaatcataataagaaactgtcattgtgatcctaccaatttgagaatagagaataaatataatannnnnnnaa |
102 |
Q |
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| T |
38828646 |
atgacgggatggaagaaataattagactaaatcataataagaaactgtcattgtgatcctaccaatttgagaatagagaataaatataatattttattaa |
38828745 |
T |
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| Q |
103 |
aacttattaaaaaatagcgttttccatt |
130 |
Q |
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| T |
38828746 |
aacttattaaaaaatagcgttttccatt |
38828773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 38828827 - 38828865
Alignment:
| Q |
190 |
ttaatagttttctcatagattgtaaagaatagttttact |
228 |
Q |
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| T |
38828827 |
ttaatagttttctcataaattgtaaagaatagttttact |
38828865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 38828889 - 38828917
Alignment:
| Q |
240 |
aagaaaaattaccggatggaagtctaaaa |
268 |
Q |
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| T |
38828889 |
aagaaaaattaccggatggaagtctaaaa |
38828917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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