View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_19 (Length: 252)
Name: NF14691_high_19
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 2528456 - 2528270
Alignment:
| Q |
1 |
ctgttttgttacttgagttcttttctctaaatcagttgtgaattctccttataaaaggagatctcgcatacttcattacccccaacaacaaggcttgcga |
100 |
Q |
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| T |
2528456 |
ctgttttgttacttgagttcttttctctaaatcagttgtgaattctccttataaaaggagatctcgcatacttcattacccccaacaacaaggcttgcga |
2528357 |
T |
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| Q |
101 |
tttacgtaattcatgtttgaggctgttcggtggtaattctttcacctcccatataataaattttgtcaaatccttcgtcttcatctt |
187 |
Q |
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| T |
2528356 |
tttacgtaattcatgtttgaggctgttcggtggtaattctttcacctcccatataataaattttgtcaaatccttcgtcttcatctt |
2528270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 2528227 - 2528184
Alignment:
| Q |
195 |
actgcatcgtcgtttcttgttttacaatcaccgcatcatgtatc |
238 |
Q |
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| T |
2528227 |
actgcatcgtcgtttcttgttttacaatcaccgcatcatgtatc |
2528184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 27461437 - 27461476
Alignment:
| Q |
31 |
atcagttgtgaattctccttataaaaggagatctcgcata |
70 |
Q |
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| T |
27461437 |
atcagttgtgaattctccatataaaaggagagctcgcata |
27461476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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