View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_2 (Length: 576)
Name: NF14691_high_2
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 292 - 561
Target Start/End: Complemental strand, 38877615 - 38877346
Alignment:
| Q |
292 |
ctggtttcttattttcaatttccttctcaacccaggttgaagcaccttctacgggaagctgaaatcacagagcaaggttctttccgtctcattcttacac |
391 |
Q |
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| T |
38877615 |
ctggtttcttattttcaatttccttctcaacccaggttgaagcaccttctacgggaagctgaaatcacagagcaaggttctttccgtctcattcttacac |
38877516 |
T |
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| Q |
392 |
agaaactcaaggaagctgaaatcatcagcaggacttcttctagtgattaactaccatttagttttcatgtacactccatatgttgcatattttaatctca |
491 |
Q |
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| T |
38877515 |
agaaactcaaggaagctgaaatcatcagcaggacttcttctagtgattaactatcatttagttttcatgtacactccatatgttgcatattttaatctca |
38877416 |
T |
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| Q |
492 |
tgcaccaaaccatacgattttggatttcttcagttaatgtatgtttaaaaattatagagatgtcatatgt |
561 |
Q |
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| T |
38877415 |
tgcaccaaaccatacgattttggatttctttagttaatgtatgtttaaaaattatagagatgtcatatgt |
38877346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 38877939 - 38877667
Alignment:
| Q |
1 |
tatacttagtttatcagttaagtctaatctaatgtnnnnnnnncagcgggtttgtgaaacaagtaaccatgctagagacttgagaaatcttttactgata |
100 |
Q |
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| T |
38877939 |
tatacttagtttatcagttaagtctaatctaatgtacaaaatacagctggcttgtgtaacaagtaaccatgctagagacttgagtaaacttttactgata |
38877840 |
T |
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| Q |
101 |
accgtttcttttagcttacttttccactttctctcccgccatatcannnnnnncattctagaatacaactttcattctcttctttctctgcactctgagt |
200 |
Q |
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| T |
38877839 |
accgtttctgttagcttacattttcacattctctcccgccatatcatttttttcattctagaatacaactttaattctcttctttctctgcgcactgagt |
38877740 |
T |
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| Q |
201 |
tttgggcttctgctttccactaccacagtgagtacaagaatttcttgtccttgaattttacactctggtttct |
273 |
Q |
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| T |
38877739 |
tttgggcttctgctttcaactaccacagtgagtacaagaatttcttgtccttgaattttacactctggtttct |
38877667 |
T |
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