View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_3 (Length: 550)
Name: NF14691_high_3
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 114 - 535
Target Start/End: Original strand, 16834443 - 16834860
Alignment:
| Q |
114 |
agtgttgacatgaatcgtaaaaggaccctagctaatgaaatttagaaaagaggttggattttatttacagattttgtttttgttacaggtgttttgaaag |
213 |
Q |
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| T |
16834443 |
agtgttgacatgaatcgtaaaagaaccc---ctaatgaaatttagaaaagagggtggattttatttttagattttgtttttgttacaggtgttttgaaag |
16834539 |
T |
|
| Q |
214 |
atatatctctacaaatttactaattataacacaaatatgcattgtgcaagaatccattcccatgatataggatcaaacaaaaagtcgctaaggtagtaga |
313 |
Q |
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| T |
16834540 |
atatatctctacaaatttactaattataacacaaatatgcattgtgcaagaatccattcccatgatataggatcaaacaaaaagtcactaaggtaggaga |
16834639 |
T |
|
| Q |
314 |
gacgaattaatatgtcacaaataac--taactgaagtgtaaccgtttttctaactgttttagtgttttgatatatgataactaactgacacttcatttaa |
411 |
Q |
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| T |
16834640 |
gacgaattaatacgctacaaataactgtaactgaagtgtaaccgtttttctaaccgttttagtgttttgatatatgataactaactgacacttcatttaa |
16834739 |
T |
|
| Q |
412 |
ttttggtagttagagtaattaattaatacgccaattaatctttattcgtaaatacatgtattgcatcacttgcataataataaggagaaagagagtagta |
511 |
Q |
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| T |
16834740 |
ttttgatagttagaataattaattaatacgccaattaatctttattcataaatacatgtattgcatcacgtgc---ataataaggagaaagagagtagta |
16834836 |
T |
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| Q |
512 |
aaagtaatagcttgcatagcaagt |
535 |
Q |
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| T |
16834837 |
aaagtaatagcttgcatagcaagt |
16834860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 7695365 - 7695412
Alignment:
| Q |
488 |
ataataaggagaaagagagtagtaaaagtaatagcttgcatagcaagt |
535 |
Q |
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|||||||||| | ||||||| ||||| ||||||||||||||||||||| |
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| T |
7695365 |
ataataaggaaatagagagtggtaaatgtaatagcttgcatagcaagt |
7695412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 16833993 - 16834054
Alignment:
| Q |
78 |
aagaataaattggcatatagnnnnnnngataattatagtgttgacatgaatcgtaaaaggac |
139 |
Q |
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| T |
16833993 |
aagaataaattggcacatagtttttttgataattatagtgttgacatgaatctttaaaggac |
16834054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 22498810 - 22498763
Alignment:
| Q |
488 |
ataataaggagaaagagagtagtaaaagtaatagcttgcatagcaagt |
535 |
Q |
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|||||||| | ||||||||||||||| ||||||||||||||||||||| |
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| T |
22498810 |
ataataagaaaaaagagagtagtaaatgtaatagcttgcatagcaagt |
22498763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 409
Target Start/End: Complemental strand, 32839594 - 32839559
Alignment:
| Q |
374 |
tgttttgatatatgataactaactgacacttcattt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32839594 |
tgttttgatatatgataactaactgacacttcattt |
32839559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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