View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14691_high_6 (Length: 447)
Name: NF14691_high_6
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 197 - 434
Target Start/End: Complemental strand, 48197834 - 48197597
Alignment:
| Q |
197 |
cagacaaggactggaggattccatactcttggtgtgtgccaatctgtgaataagttgctaaagcatgaaggttttctaggattatataagtaagactcaa |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48197834 |
cagacaaggacgggaggattccatactcttggtgtgtgccaatctgtgaataagttgctaaagcatgaaggttttctaggattatataagtaagactcaa |
48197735 |
T |
|
| Q |
297 |
gttatatcatatgatttttctttttgctttacaattcatgtgtgcgtgttaacctatgcttatgtggtggttgcagaggaaatggagctagtgttatccg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48197734 |
gttatatcatatgatttttctttttgctttacaattcatgtgtgcgtgttaacctatgcttatgtggtggttgcagaggaaatggagctagtgttatccg |
48197635 |
T |
|
| Q |
397 |
gattgttccatacgcagccttgcattttatgacatatg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48197634 |
gattgttccatacgcagccttgcattttatgacatatg |
48197597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 48198015 - 48197883
Alignment:
| Q |
16 |
atcatgattttaattcgatcgacaatggtggctccgagactattttttaaatgggtgtatgttcctctttacggcgttcaatagtgagataactcagaga |
115 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48198015 |
atcatgattttaatgcgatcgacaatagtggctccaagactattttttaaatgggtgtatgttcctctttacggccttcaatagtgagataactcagaga |
48197916 |
T |
|
| Q |
116 |
agatttgattgctatttctattgttgatgaatg |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
48197915 |
agatttgattgctattgctattgttgatgaatg |
48197883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University