View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_high_7 (Length: 435)
Name: NF14691_high_7
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 113 - 419
Target Start/End: Complemental strand, 4403365 - 4403059
Alignment:
| Q |
113 |
attgacatctaaatgctctaaaaaccaaccttttgcagctgccaatgccaagagaactctaacagtagtgagttgaccaaccggactaaaggtctcaaaa |
212 |
Q |
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| T |
4403365 |
attgacatctaaatgctctaaaaaccaaccttttgcagctgccaatgccaagagaactctaacagtagtgagttgaccaaccggactaaaggtctcaaaa |
4403266 |
T |
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| Q |
213 |
tagtccatccggtctaattgagtaaatcctttggcaacaagtcgtgtcttttaacgttcaatagtgccatcaacatgatgtttgattttgtaaacccaac |
312 |
Q |
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| T |
4403265 |
tagtccatccggtctaattgagtaaatcctttggcaacaagtcgtgtcttttaacgttcaatagtgccatcaacatgatgtttgattttctaaacccaac |
4403166 |
T |
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| Q |
313 |
gacaaccaatagaagttttacctgtaggaagatccacaatggaccatgtattgttcaaagcatgtgaatcaagttcagttttcatagccttttgccaaca |
412 |
Q |
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| T |
4403165 |
gacaaccaatagaagttttacttgtaggaagatccacaatggaccatgtattgttcaaagcaagtgaatcaagttcagttttcatagccttttgccaaca |
4403066 |
T |
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| Q |
413 |
ctcatgt |
419 |
Q |
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||||||| |
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| T |
4403065 |
ctcatgt |
4403059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 4403618 - 4403502
Alignment:
| Q |
2 |
agactagtaaagccacaaaacgcgatgttgaggcttttacgaacatagaatggtcaacttgagactgagaactaaccaaaaagagaagaatagtagtcag |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| || |
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| T |
4403618 |
agactagtaaagccacaaaagacgatgttgaggcttttacgagcatagaatagtccgcttgagactgagaacaaaccaaaaagagaagagtagtagtgag |
4403519 |
T |
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| Q |
102 |
tttatgattccattgac |
118 |
Q |
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| T |
4403518 |
tttatgattccaatgac |
4403502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 38824469 - 38824356
Alignment:
| Q |
306 |
acccaacgacaaccaatagaagttttacctgtaggaagatccacaatggaccatgtattgttcaaagcatgtgaatcaagttcagttttcatagcctttt |
405 |
Q |
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| T |
38824469 |
acccaacgacatccaataggggttttacctgcaggaagatcaacaatagtccaggttttgtttaatgaaagagcatcaagctccgctttcatagcattct |
38824370 |
T |
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| Q |
406 |
gccaacactcatgt |
419 |
Q |
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| T |
38824369 |
gccaacattcatgt |
38824356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 6097119 - 6097026
Alignment:
| Q |
326 |
agttttacctgtaggaagatccacaatggaccatgtattgttcaaagcatgtgaatcaagttcagttttcatagccttttgccaacactcatgt |
419 |
Q |
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| T |
6097119 |
agttttaccactaggaagatcgacaatggaccatgtattattcaaggccaaggcatcaagttcaaccttcatagctttctgccaacaatcatgt |
6097026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 17882855 - 17882968
Alignment:
| Q |
306 |
acccaacgacaaccaatagaagttttacctgtaggaagatccacaatggaccatgtattgttcaaagcatgtgaatcaagttcagttttcatagcctttt |
405 |
Q |
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||||||||||| ||||||| |||||||||| ||||||||| ||||| | ||| || ||||| || | | | | |||||| || | ||||||||| || | |
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| T |
17882855 |
acccaacgacatccaataggggttttacctgcaggaagatcaacaatagtccaggttttgtttaatgaaagagcatcaagctccgctttcatagcattct |
17882954 |
T |
|
| Q |
406 |
gccaacactcatgt |
419 |
Q |
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||||||| |||||| |
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| T |
17882955 |
gccaacattcatgt |
17882968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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