View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14691_low_12 (Length: 332)
Name: NF14691_low_12
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 42014541 - 42014250
Alignment:
| Q |
17 |
taggcaaccgatcaaactcagcagcttcaatcctaggaggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactgaacagtacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42014541 |
taggcaaccgatcaaactcagcagcttcaatcctaggaggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactcaacagtacc |
42014442 |
T |
|
| Q |
117 |
aacaagagaactttgtcgaaaatcaggtcttgagaatccaaactcaacatcagtaacatcaccagatgaaagaacaccatcgttctggaaacttccagaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42014441 |
aacaagagaactttgtcgaaaatcaggtcttgagaatccaaactcaacatcggcaacatcaccagatgaaagaacaccatcgttctggaaacttccagaa |
42014342 |
T |
|
| Q |
217 |
gcgcttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaa |
308 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42014341 |
gcgcttcttgggtcggtgaggtaactatcgagtgtgtcagagacggtgatcggtgaggaatgagaggaagatgatgggattgtgaatgttaa |
42014250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 1247769 - 1247471
Alignment:
| Q |
17 |
taggcaaccgatcaaactcagcagcttcaatcctaggaggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactgaacagtacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1247769 |
taggcaaccgatcaaactcagcagcttcaatcctaggaggccaaaatctgggattcttataacatagaaacacgtgtcgttcgtacaactcaacagtacc |
1247670 |
T |
|
| Q |
117 |
aacaagagaactttgtcgaaaatcaggtcttgagaatccaaactcaacatcagtaacatcaccagatgaaagaacaccatcgttctggaaacttccagaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1247669 |
aacaagagaactttgccgaaaatcaggtcttgagaatccaaactcaacatcagcaacatcaccagatgaaagaacaccatcgttctggaaacttccagaa |
1247570 |
T |
|
| Q |
217 |
gcgcttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaagggttct |
315 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1247569 |
gcgcttcttgggtcagtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatgggattgtgaatgttaagggttct |
1247471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University