View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_18 (Length: 276)
Name: NF14691_low_18
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 4013303 - 4013540
Alignment:
| Q |
20 |
accaaaacagataaagagtcgattttgaaattgaaatgcacttcattaagagt-tttaacacattatatcattttgataagtgtatttattagttcggag |
118 |
Q |
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| T |
4013303 |
accaaaacagataaagagtcgattttggaattgaaatgcacttcattaagagtctttaacacattatatcattttgataagtgcatttattagttcggag |
4013402 |
T |
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| Q |
119 |
tcaattattgatgatttagtataaaagctatgaagatggagagttgacaatagatttttgggactgttatgttgttgttgcggctgctaggtgctgtcta |
218 |
Q |
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| T |
4013403 |
tcaattattgatgatttagtataaacgctatgaagatggagagttgacaatagatttttgggactgttatgttgttgttgcggctgctaggtgttgtcta |
4013502 |
T |
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| Q |
219 |
tactctatagcttgtgttttgtttcctactctctggat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4013503 |
tactctatagcttgtgttttgtttcctactctctggat |
4013540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 14835236 - 14835473
Alignment:
| Q |
20 |
accaaaacagataaagagtcgattttgaaattgaaatgcacttcattaagagt-tttaacacattatatcattttgataagtgtatttattagttcggag |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||| ||| |
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| T |
14835236 |
accaaaacagagaaagagtcgattttgaaattgaaatgcacttcattaagagtctttaacacattatatcatttcgataaatgcatttattagttccgag |
14835335 |
T |
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| Q |
119 |
tcaattattgatgatttagtataaaagctatgaagatggagagttgacaatagatttttgggactgttatgttgttgttgcggctgctaggtgctgtcta |
218 |
Q |
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| T |
14835336 |
tcaattattgatgatttagtataaaagctatgaagatggagagatgacaatagatttttgggactgttctgttgttgttgcggctgctaggtgctgtcta |
14835435 |
T |
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| Q |
219 |
tactctatagcttgtgttttgtttcctactctctggat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14835436 |
tactctatagcttgtgttttgtttcctactctctggat |
14835473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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