View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_19 (Length: 254)
Name: NF14691_low_19
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_19 |
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| [»] scaffold0989 (1 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2467093 - 2467331
Alignment:
| Q |
1 |
acaactggaatatcacaagctccttgatgccaacatattctaataacaagaacattcaaaataaaatagaacaagcatccaaatggtacaaaattctccc |
100 |
Q |
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| T |
2467093 |
acaactggaatatcacaagctccttgatgcaaacatattctaataacaagaacattcaaaataaaatagaacaagcatccaaacggtacaaaattctccc |
2467192 |
T |
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| Q |
101 |
ttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgttaataaggcacaatggtagtctattctagaattcaatgatattgaagatc |
200 |
Q |
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| T |
2467193 |
ttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgttaataagacacaatggtagtctactctagaattcaatgatattgaatatc |
2467292 |
T |
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| Q |
201 |
atcctcattattttataccagaaaactaaatgttcttta |
239 |
Q |
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| T |
2467293 |
atcctcattattttatactagaaaactaaatgttcttta |
2467331 |
T |
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Target: scaffold0989 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 156 - 96
Alignment:
| Q |
92 |
aattctcccttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgtta |
152 |
Q |
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| T |
156 |
aattctcactttcaatgcaatagagcaaaataaaatttaaagcatccaaacagaattgtta |
96 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 14435311 - 14435371
Alignment:
| Q |
92 |
aattctcccttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgtta |
152 |
Q |
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| T |
14435311 |
aattctcactttcaatgcaatagagcaaaataaaatttaaagcatccaaacagaattgtta |
14435371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 7895922 - 7896013
Alignment:
| Q |
92 |
aattctcccttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgttaataaggcacaatggtagtctattctagaatt |
183 |
Q |
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| T |
7895922 |
aattctcactttcaatgcaataaagcaaaataaatttaaaagcatccaaacataatcattaccaagacacaatggtagtccactctagaatt |
7896013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 438 - 482
Alignment:
| Q |
104 |
caatacaatagagcaaaataaaatttaaagcatccaaacggaatt |
148 |
Q |
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| T |
438 |
caatgcaatagagcaaaataaaattaagagcatccaaacagaatt |
482 |
T |
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