View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_23 (Length: 237)
Name: NF14691_low_23
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9871628 - 9871843
Alignment:
| Q |
1 |
caagaaagaaagaagaaaaaggaactcactacagaaattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaa |
100 |
Q |
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| T |
9871628 |
caagaaagaaagaagaaaaaggaactcactacagaaattgctggtggtgatattaattccgctagaagatgagttagaacatctatcattcttttaaaaa |
9871727 |
T |
|
| Q |
101 |
atgattgtttctccttattcgattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctgaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871728 |
atgattgtttctccttattcgattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctgaaataa |
9871827 |
T |
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| Q |
201 |
aggttgaaggactagg |
216 |
Q |
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|||||||||||||||| |
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| T |
9871828 |
aggttgaaggactagg |
9871843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 9897285 - 9897464
Alignment:
| Q |
21 |
ggaactcactacagaaattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattc |
120 |
Q |
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||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
9897285 |
ggaactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaacttctattattcttttaaaaaatgattgtttctccttcttc |
9897384 |
T |
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| Q |
121 |
gattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctgaaataa |
200 |
Q |
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| T |
9897385 |
gactcatgagactgatcttgttcattaacctaaaaatcaatatagttgaggacatttcaaattatcaccgtctgaaataa |
9897464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 9907550 - 9907671
Alignment:
| Q |
36 |
aattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattcgattcatgagactga |
135 |
Q |
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||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||| ||| || || |||||| |
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| T |
9907550 |
aattgctggtggtgacattagttctgctagaagatgacttagaacttctatcattctattgaaaaatgattgtttctccttcttcaatacaattgactga |
9907649 |
T |
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| Q |
136 |
tcttgttcattaacctgaaaat |
157 |
Q |
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|||||||||| || |||||||| |
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| T |
9907650 |
tcttgttcatcaatctgaaaat |
9907671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 9864779 - 9864658
Alignment:
| Q |
36 |
aattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattcgattcatgagactga |
135 |
Q |
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||||||||||||||| |||| |||||||||||||||| ||| ||| |||||||||||||| ||||| ||| ||| ||||| ||| || || |||||| |
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| T |
9864779 |
aattgctggtggtgacattagttctgctagaagatgacttaaaacttctatcattcttttgaaaaacaattatttttccttcttcaatacaattgactga |
9864680 |
T |
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| Q |
136 |
tcttgttcattaacctgaaaat |
157 |
Q |
| |
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|||||||||| || |||||||| |
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| T |
9864679 |
tcttgttcatcaatctgaaaat |
9864658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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