View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14691_low_26 (Length: 227)

Name: NF14691_low_26
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14691_low_26
NF14691_low_26
[»] chr3 (9 HSPs)
chr3 (1-227)||(54346761-54346987)
chr3 (1-227)||(27156114-27156340)
chr3 (35-212)||(43812988-43813165)
chr3 (44-224)||(46428585-46428765)
chr3 (52-224)||(42794515-42794687)
chr3 (42-224)||(54812236-54812418)
chr3 (124-227)||(43912322-43912425)
chr3 (118-227)||(51841259-51841367)
chr3 (179-227)||(37503020-37503068)
[»] chr8 (5 HSPs)
chr8 (2-227)||(1636024-1636249)
chr8 (1-227)||(26616673-26616897)
chr8 (3-227)||(456309-456533)
chr8 (42-224)||(44145733-44145915)
chr8 (44-227)||(38560608-38560791)
[»] chr1 (9 HSPs)
chr1 (1-227)||(23949724-23949950)
chr1 (1-227)||(5308668-5308894)
chr1 (1-227)||(50952514-50952740)
chr1 (1-227)||(23084857-23085083)
chr1 (1-206)||(42677238-42677443)
chr1 (3-227)||(34553821-34554045)
chr1 (46-224)||(22065193-22065371)
chr1 (109-227)||(2601209-2601326)
chr1 (179-227)||(6293947-6293995)
[»] chr7 (7 HSPs)
chr7 (1-227)||(8019692-8019917)
chr7 (2-227)||(48618960-48619185)
chr7 (3-226)||(29213677-29213901)
chr7 (42-224)||(24473477-24473659)
chr7 (42-154)||(24468599-24468711)
chr7 (43-101)||(8035768-8035826)
chr7 (179-227)||(46045838-46045886)
[»] chr4 (8 HSPs)
chr4 (1-227)||(36894363-36894589)
chr4 (1-227)||(34389752-34389978)
chr4 (44-224)||(47597580-47597760)
chr4 (42-117)||(4228307-4228382)
chr4 (138-220)||(43270874-43270956)
chr4 (43-101)||(44307581-44307639)
chr4 (179-227)||(1369365-1369413)
chr4 (179-227)||(28945496-28945544)
[»] chr2 (10 HSPs)
chr2 (1-227)||(13186914-13187140)
chr2 (1-227)||(7305027-7305253)
chr2 (1-155)||(40426114-40426268)
chr2 (25-208)||(37307265-37307448)
chr2 (3-182)||(6598990-6599169)
chr2 (3-227)||(40190368-40190592)
chr2 (42-224)||(17290058-17290240)
chr2 (25-133)||(26381237-26381345)
chr2 (160-212)||(26381377-26381429)
chr2 (179-227)||(42865848-42865896)
[»] chr5 (8 HSPs)
chr5 (1-227)||(22540236-22540462)
chr5 (1-227)||(18259086-18259312)
chr5 (6-227)||(34080690-34080911)
chr5 (42-224)||(4560304-4560486)
chr5 (42-224)||(18934082-18934264)
chr5 (44-227)||(18883407-18883590)
chr5 (118-212)||(32216833-32216927)
chr5 (179-227)||(14024866-14024914)
[»] chr6 (2 HSPs)
chr6 (125-224)||(1223033-1223132)
chr6 (42-93)||(1222968-1223019)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54346987 - 54346761
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54346987 caaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggg 54346888  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54346887 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgat 54346788  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  54346787 caaaatctttgaatcactttccactat 54346761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27156114 - 27156340
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||     
T  27156114 caaggaggagactccaacactagaaaattaaaatgatctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggt 27156213  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27156214 tgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgat 27156313  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  27156314 caaaatctttgaatcactttccactat 27156340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 43813165 - 43812988
Alignment:
Q  35 gatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagctt 134  Q
    ||||| ||||||||||||| |||||||| |||||| |||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| || || |||    
T  43813165 gatctatagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcatctgcaacaactt 43813066  T
Q  135 ccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttga 212  Q
      |||| ||||||||||||||| ||||||| |||||  | |||||||||||||||||||| |||||||||||||||||    
T  43813065 ttggatccggtaaactaaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 46428765 - 46428585
Alignment:
Q  44 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 143  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||| ||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||||    
T  46428765 aaatgctaaaattagcaagccaatcggcacttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacg 46428666  T
Q  144 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
     | |||||||| ||| ||||||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||||    
T  46428665 atgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 46428585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 42794687 - 42794515
Alignment:
Q  52 aaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaacta 151  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||    
T  42794687 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 42794588  T
Q  152 aaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    ||| ||| ||||||||||| |||||||| || | |||||||||||||||||| ||||| || |||||||||||    
T  42794587 aaataggcatattcccattaaacttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccac 42794515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 54812236 - 54812418
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| | ||  |||  |||||||||||| ||||    
T  54812236 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcctgata 54812335  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  54812336 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 54812418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 43912322 - 43912425
Alignment:
Q  124 ttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttcca 223  Q
    |||| |||||||| |||||| | | |||||| ||  ||||||||||| |||||||| || ||||||||||||| |||||| |||||||| |||||||| |    
T  43912322 ttcaacagcttcctgatacgatgagctaaaatagagatattcccattaaacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaa 43912421  T
Q  224 ctat 227  Q
    ||||    
T  43912422 ctat 43912425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 51841259 - 51841367
Alignment:
Q  118 ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcac 217  Q
    ||||||||||| | ||| |||||||| | |||||||| ||| ||| |||| ||||| |||||||| |||||| | ||||||||||| | |||||| ||||    
T  51841259 ctcatcttcagaacctttcggatacgctcaactaaaatagggatagtccctttgaaattgaaattgtcagaagt-atgtcgatcaataactttgagtcac 51841357  T
Q  218 tttccactat 227  Q
    | ||||||||    
T  51841358 tctccactat 51841367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 37503068 - 37503020
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  37503068 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 37503020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 1636249 - 1636024
Alignment:
Q  2 aaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  1636249 aaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggt 1636150  T
Q  102 gagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1636149 gagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatc 1636050  T
Q  202 aaaatctttgaatcactttccactat 227  Q
    ||||||||||||||||||||||||||    
T  1636049 aaaatctttgaatcactttccactat 1636024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26616673 - 26616897
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||     
T  26616673 caaggaggagactccaacactagaaaattaaaatgatctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggt 26616772  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616773 tgagttgaacattccaactcatcttcagcagcttccagatccggtaaact--aacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 26616870  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  26616871 caaaatctttgaatcactttccactat 26616897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 456309 - 456533
Alignment:
Q  3 aggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtg 102  Q
    ||||||| | |||||||| | ||||| ||| ||||  ||||||||| |||||||||||||||||| | |||||||||||||||| || ||||||||| ||    
T  456309 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttg 456408  T
Q  103 agttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatca 202  Q
    |||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  456409 agttgaacattccaactcatcttcagtagcttccggatccggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatca 456508  T
Q  203 aaatctttgaatcactttccactat 227  Q
    || ||||||||||||||||||||||    
T  456509 aactctttgaatcactttccactat 456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 44145915 - 44145733
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| || |||||| |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  44145915 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 44145816  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  44145815 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 44145733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 38560608 - 38560791
Alignment:
Q  44 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 143  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||  ||||||||||| ||| ||| |||| ||||  |||  |||||||||||  ||||||    
T  38560608 aaatgctaaaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttcttgatacg 38560707  T
Q  144 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
     | |||||||| ||| ||||||||||| || |||||  |||||||||||| ||||||||| ||||| ||  |||||||||||||    
T  38560708 atgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccactat 38560791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23949950 - 23949724
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  23949950 caaggaggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggt 23949851  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23949850 tgagttgaacattctaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 23949751  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  23949750 caaaatctttgaatcactttccactat 23949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5308894 - 5308668
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  5308894 caaggaggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggt 5308795  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5308794 tgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgat 5308695  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||| ||||||||||||||    
T  5308694 caaaatctttgattcactttccactat 5308668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50952514 - 50952740
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||| | |||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||     
T  50952514 caaggaggatactccaacactagaaaattaaaaagatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggt 50952613  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50952614 tgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcagaaatcatgtcgat 50952713  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  50952714 caaaatctttgaatcactttccactat 50952740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23084857 - 23085083
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||     
T  23084857 caaggaggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggt 23084956  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23084957 tgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcgat 23085056  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||| ||||||||||||||||    
T  23085057 caaaatctttaaatcactttccactat 23085083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42677443 - 42677238
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  42677443 caaggaggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggt 42677344  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42677343 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgat 42677244  T
Q  201 caaaat 206  Q
    ||||||    
T  42677243 caaaat 42677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 34553821 - 34554045
Alignment:
Q  3 aggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtg 102  Q
    ||||||||| |||| ||||||||||||||| |||| |||| ||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||||| ||    
T  34553821 aggaggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttg 34553920  T
Q  103 agttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatca 202  Q
    |||||||||||| ||||||||||||||| |||| |||| | || |||||||| || |||||||||||  || |  ||||||||||||||||||||||| |    
T  34553921 agttgaacattctaactcatcttcagcatcttctggatccagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaaatcatgtcgataa 34554020  T
Q  203 aaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||    
T  34554021 aaatctttgaatcactttccactat 34554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 22065193 - 22065371
Alignment:
Q  46 atgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggt 145  Q
    ||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||| ||| |||||| |    
T  22065193 atgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcctcctgatacgat 22065292  T
Q  146 aaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
     |||||||| ||| | ||||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||||    
T  22065293 gaactaaaataggcacattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 22065371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 2601326 - 2601209
Alignment:
Q  109 acattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatct 208  Q
    |||| |||| |||| ||||||||||||  ||||  || |||||||| ||  |||||| |||| |||||||| || |||||| |||||||||| || ||||    
T  2601326 acatcccaattcatgttcagcagcttcatgatatagtgaactaaaatagttatattctcattaaacttgaatttgtcagaattcatgtcgat-aatatct 2601228  T
Q  209 ttgaatcactttccactat 227  Q
    | |||||||||||||||||    
T  2601227 tagaatcactttccactat 2601209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 6293995 - 6293947
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  6293995 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 6293947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8019692 - 8019917
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8019692 caaggaggagactccagcacaagaaaattaaa-tgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggg 8019790  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019791 tgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 8019890  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  8019891 caaaatctttgaatcactttccactat 8019917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 48619185 - 48618960
Alignment:
Q  2 aaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 101  Q
    |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |    
T  48619185 aaggaggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggtt 48619086  T
Q  102 gagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  48619085 gagttgaacattccaactcatcttcagcagcttccggatacagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcaatc 48618986  T
Q  202 aaaatctttgaatcactttccactat 227  Q
    ||||||||||||||||||||||||||    
T  48618985 aaaatctttgaatcactttccactat 48618960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 29213677 - 29213901
Alignment:
Q  3 aggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttcctt-cacgccaagtatgggt 101  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||| |    
T  29213677 aggaggagactccaacacaagaaaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggtt 29213776  T
Q  102 gagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatc 201  Q
    ||||||||||||||||||||||||||  |||||| |||| |||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  29213777 gagttgaacattccaactcatcttcaatagcttctggatccggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaatcatgtcgatc 29213876  T
Q  202 aaaatctttgaatcactttccacta 226  Q
    |||||||||||||||||||||||||    
T  29213877 aaaatctttgaatcactttccacta 29213901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 24473659 - 24473477
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  24473659 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 24473560  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| ||||||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||||    
T  24473559 cgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 24473477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 24468711 - 24468599
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  24468711 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 24468612  T
Q  142 cggtaaactaaaa 154  Q
    || | ||||||||    
T  24468611 cgatgaactaaaa 24468599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 8035826 - 8035768
Alignment:
Q  43 gaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 101  Q
    |||||||| |||||||| ||||||||  |||| || || ||||||||||||||||||||    
T  8035826 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgggt 8035768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 46045886 - 46045838
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  46045886 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 46045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36894363 - 36894589
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36894363 caaggaggagactccaacactagaaaattaaaatgatctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggt 36894462  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  36894463 tgagttgaacattccaactcatcttcagcaacttccggatccggtaaactaaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgat 36894562  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  36894563 caaaatctttgaatcactttccactat 36894589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34389752 - 34389978
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| | |||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  34389752 caaggaggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggt 34389851  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34389852 tgagttgaacattccaaatcatcttcagcagctttcggatccggtaaactaaaacaagaatattcccattgaacttgaaattatcagaaatcatgtcgat 34389951  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  34389952 caaaatctttgaatcactttccactat 34389978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 47597580 - 47597760
Alignment:
Q  44 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 143  Q
    ||||||| |||||||| ||||||||  |||| |||||||||| | ||||||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||     
T  47597580 aaatgctaaaattagcaagccaatcggcacttctatttcctttatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgataca 47597679  T
Q  144 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
     | |||||||| ||| ||||||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||||    
T  47597680 atgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 47597760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 4228382 - 4228307
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaa 117  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||    
T  4228382 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 4228307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 43270874 - 43270956
Alignment:
Q  138 gatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcacttt 220  Q
    |||||| | |||||||| ||| ||||| ||||| | ||||||||| ||| |||||||||||||||| ||||| || |||||||    
T  43270874 gatacgatgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttt 43270956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 44307639 - 44307581
Alignment:
Q  43 gaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 101  Q
    |||||||| |||||||| ||||||||  |||| || || ||||||||||||||||||||    
T  44307639 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgggt 44307581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 1369413 - 1369365
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  1369413 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 1369365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 28945496 - 28945544
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  28945496 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 28945544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13187140 - 13186914
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||      
T  13187140 caaggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgat 13187041  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13187040 tgagttgaacattccaactcgtcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgat 13186941  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  13186940 caaaatctttgaatcactttccactat 13186914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7305027 - 7305253
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  7305027 caaggaggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggt 7305126  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  7305127 tgagttgaaaattccaactcatcttcagcaggttccggatccggtaaagtaaaacaggaatattctcattgaacttgaaattattagaaatcatgtcgat 7305226  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  7305227 caaaatctttgaatcactttccactat 7305253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 40426114 - 40426268
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||||||    
T  40426114 caaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatggg 40426213  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40426214 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 40426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 37307265 - 37307448
Alignment:
Q  25 aaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatct 124  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  37307265 aaattaaagtgatccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatct 37307364  T
Q  125 tcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatct 208  Q
    || ||| ||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37307365 tcggcaactttcagatccggtaaactaaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaaatct 37307448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 6599169 - 6598990
Alignment:
Q  3 aggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtg 102  Q
    ||||||||| |||| ||| | ||||| ||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||    
T  6599169 aggaggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttg 6599070  T
Q  103 agttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaatt 182  Q
    ||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6599069 agttgaacattccaattcatcttcagcaacttccggatccggtgaactaaaacaggaatattcccattgaacttgaaatt 6598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 40190368 - 40190592
Alignment:
Q  3 aggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtg 102  Q
    ||||||||| |||| ||| || |||||||| ||||| ||| |||||||||| |||| ||| ||||| |||||||||||||||||| | ||||||||| ||    
T  40190368 aggaggagattccaacactagtaaattaaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttg 40190467  T
Q  103 agttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatca 202  Q
    ||||||||||||||||||||||||||||| ||  ||||  |||  ||||||| ||||||||   |||||||||| ||||||||||||||||| |||||||    
T  40190468 agttgaacattccaactcatcttcagcagttttgggatctggtggactaaaataggaatatgttcattgaacttaaaattatcagaaatcatatcgatca 40190567  T
Q  203 aaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||    
T  40190568 aaatctttgaatcactttccactat 40190592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 17290240 - 17290058
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    |||||| || |||||||| ||||||||  |||| |||||||||||||||||| ||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  17290240 agaaatactaaaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcctgata 17290141  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  17290140 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 17290058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 26381237 - 26381345
Alignment:
Q  25 aaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatct 124  Q
    ||||| ||||||||  ||| |||||| |  ||||| |||||||||| |||  |||||||||||| | |||||||| ||| ||| |||| ||| |||||||    
T  26381237 aaattcaaatgatccttagtaatgctgatgttagcaagccaatcaaaacttttatttccttcacacgaagtatggttgatttgcacatgccatctcatct 26381336  T
Q  125 tcagcagct 133  Q
    |||| ||||    
T  26381337 tcagaagct 26381345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 26381377 - 26381429
Alignment:
Q  160 atattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttga 212  Q
    |||||||| ||||| |  ||||| |||||||||||||| ||||||||||||||    
T  26381377 atattcccgttgaaatgaaaattgtcagaaatcatgtcaatcaaaatctttga 26381429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 42865896 - 42865848
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  42865896 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 42865848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22540462 - 22540236
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| | || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||     
T  22540462 caaggaggagacttcaacactagaaaatttaaatgatctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggt 22540363  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  22540362 tgagttgaacattccaactcatcttcagcagcttccggatccagtaaactaaaacaggaatatttccatcgaacttgaaattatcagaaatcacgtcgat 22540263  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    ||||||||||||||||||||| |||||    
T  22540262 caaaatctttgaatcactttcaactat 22540236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18259086 - 18259312
Alignment:
Q  1 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 100  Q
    ||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||     
T  18259086 caaggaggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatggt 18259185  T
Q  101 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  18259186 tgagttgaacatttcaacttatcttcagcagcttccggatccggtaaactaaaacaagaatattcccattgaatttggaattatcagaaatcatgtcgat 18259285  T
Q  201 caaaatctttgaatcactttccactat 227  Q
    |||||||||||||||||||||||||||    
T  18259286 caaaatctttgaatcactttccactat 18259312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 34080690 - 34080911
Alignment:
Q  6 aggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagt 105  Q
    |||||| |||| ||| | ||||||||| |||| |||| ||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||    
T  34080690 aggagactccaacactataaaattaaagtgatatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagt 34080789  T
Q  106 tgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 205  Q
    ||||||||||||| |||||||||||||||| |||| |||| |||||||||| |||||||| ||||||||||||| |||||||||||||| || |||||||    
T  34080790 tgaacattccaacccatcttcagcagcttctggatccggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaa 34080889  T
Q  206 tctttgaatcactttccactat 227  Q
    ||||| ||||||||||||||||    
T  34080890 tctttaaatcactttccactat 34080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 4560304 - 4560486
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| || |||||| |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  4560304 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 4560403  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| ||||||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||||    
T  4560404 cgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccac 4560486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 18934264 - 18934082
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 141  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  18934264 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 18934165  T
Q  142 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| |  |||||||||||    
T  18934164 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccac 18934082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 227
Target Start/End: Complemental strand, 18883590 - 18883407
Alignment:
Q  44 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 143  Q
    ||||||| |||||||| ||||||||  ||   ||||||||||| |||||||||||| ||| ||| ||||  |||  |||  |||| ||||||| |||||     
T  18883590 aaatgctaaaattagcaagccaatcggcatatctatttccttcgcgccaagtatggttgatttgcacatgtcaatccattctcagtagcttcctgataca 18883491  T
Q  144 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
     | |||||||| ||| ||||||||||| ||||| || || || ||||||||||||||||| |||||||| ||| ||||||||||    
T  18883490 atgaactaaaatagggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactat 18883407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 32216927 - 32216833
Alignment:
Q  118 ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttga 212  Q
    ||||||||||| ||||||  |||||| || ||||||| ||| |||||| ||||||| | ||||||  ||| |||||||| |||||||||||||||    
T  32216927 ctcatcttcagaagcttctagatacgctagactaaaatagggatattctcattgaaatggaaattgccaggaatcatgttgatcaaaatctttga 32216833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 14024914 - 14024866
Alignment:
Q  179 aattatcagaaatcatgtcgatcaaaatctttgaatcactttccactat 227  Q
    |||| |||| ||||||||||| |||||||||||| ||||| ||||||||    
T  14024914 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactat 14024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 1223033 - 1223132
Alignment:
Q  125 tcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 224  Q
    |||||||||||| |||||| | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  1223033 tcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 1223132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 1222968 - 1223019
Alignment:
Q  42 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaa 93  Q
    ||||||||| |||||||| ||||||||  |||| ||||||||||||||||||    
T  1222968 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 1223019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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