View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_27 (Length: 227)
Name: NF14691_low_27
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_27 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29799708 - 29799934
Alignment:
| Q |
1 |
cactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799708 |
cactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattt |
29799807 |
T |
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| Q |
101 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799808 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
29799907 |
T |
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| Q |
201 |
cattaggaattgttagattatcaagtt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29799908 |
cattaggaattgttagattatcaagtt |
29799934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45410644 - 45410867
Alignment:
| Q |
1 |
cactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattt |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || |||||||||||||| |
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| T |
45410644 |
cactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccatta |
45410743 |
T |
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| Q |
101 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
200 |
Q |
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|||||||||||||| || |||||| |||||||| |||| |||||||| ||| || |||||||||||| || || || || |||||||| || || | |
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| T |
45410744 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgtttgttc |
45410843 |
T |
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| Q |
201 |
cattaggaattgttagattatcaa |
224 |
Q |
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| T |
45410844 |
cattaggcactgttacatcatcaa |
45410867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45419953 - 45420176
Alignment:
| Q |
1 |
cactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattt |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || |||||||||||||| |
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| T |
45419953 |
cactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccatta |
45420052 |
T |
|
| Q |
101 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
200 |
Q |
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|||||||||||||| || |||||| || ||||| |||| |||||||| ||| || |||||||||||| || || || || |||||||| ||||| | |
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| T |
45420053 |
acatcatccatgaacctctctggtttgaaatcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgttggttc |
45420152 |
T |
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| Q |
201 |
cattaggaattgttagattatcaa |
224 |
Q |
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| T |
45420153 |
cattaggcactgttacatcatcaa |
45420176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 26835145 - 26835367
Alignment:
| Q |
2 |
actatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattta |
101 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || |||||||||||||| | |
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| T |
26835145 |
actatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaa |
26835244 |
T |
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| Q |
102 |
catcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtccc |
201 |
Q |
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||||||| | ||| || |||||| |||||||| |||| |||||||| ||| | ||||||||||||||| || || || |||||||| ||||| || |
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| T |
26835245 |
catcatcgacgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattgctactacatcaatccacatgttggttcc |
26835344 |
T |
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| Q |
202 |
attaggaattgttagattatcaa |
224 |
Q |
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|||||| | ||||| |||||||| |
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| T |
26835345 |
attaggcactgttacattatcaa |
26835367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 63471 - 63677
Alignment:
| Q |
1 |
cactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgcatccaccattt |
100 |
Q |
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|||||| ||||||||||| ||| ||||||| ||||||| ||| ||| |||||||| |||||||| ||||| |||||| | |||| |||| | ||||| |
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| T |
63471 |
cactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggtggcattccccattg |
63570 |
T |
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| Q |
101 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
200 |
Q |
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|||||| |||||| || |||||| ||||| ||| ||| | ||||| |||| ||||||||||||||| |||||||| ||||| || ||||||| |
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| T |
63571 |
gcatcattcatgaacctctctggtttaaacttgtttgcatcattcccccataatgtcatgtcatggtgcattgctacaacgtcaatccaaatgttggtcc |
63670 |
T |
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| Q |
201 |
cattagg |
207 |
Q |
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| T |
63671 |
ctttagg |
63677 |
T |
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