View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_28 (Length: 227)
Name: NF14691_low_28
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_28 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9871419 - 9871193
Alignment:
| Q |
1 |
ctctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871419 |
ctctacttcttttctaaccacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctca |
9871320 |
T |
|
| Q |
101 |
ctgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871319 |
ctgcaggcttgaaatcatcaagtgtaaaaccattgactctcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaa |
9871220 |
T |
|
| Q |
201 |
agccgcggctaattacggctttctccc |
227 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
9871219 |
agctgcggctaattacggctttctccc |
9871193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9897052 - 9896826
Alignment:
| Q |
1 |
ctctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctca |
100 |
Q |
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||||||||||||| |||| ||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9897052 |
ctctacttcttttttaaccacacaattatgtgtttaaacttaattctttgcaggaacggaacaattccttgcatcacgcttttgcttggtggtaacctca |
9896953 |
T |
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| Q |
101 |
ctgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaa |
200 |
Q |
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| T |
9896952 |
cggcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataacccggcttttcctgctacctgttattggattgtttattgtgaa |
9896853 |
T |
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| Q |
201 |
agccgcggctaattacggctttctccc |
227 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
9896852 |
agccgcggctagttacggctttctccc |
9896826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 9865017 - 9865243
Alignment:
| Q |
2 |
tctacttcttttctaac-aacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctca |
100 |
Q |
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||||||| ||||||||| || | |||||||||||||||||||| ||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
9865017 |
tctactttttttctaaccaaaacaattatttgtttaaacttaactcttttcaggaatggaacaattccctgcatcacccttttgcttggtggtaaactca |
9865116 |
T |
|
| Q |
101 |
ctgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
9865117 |
ctgcaggcttgaaatcatcaagtgtaaaaccattgacactgatcagcatcattataactcggctttttgtactacctgttattggattgtttattgtgaa |
9865216 |
T |
|
| Q |
201 |
agccgcggctaattacggctttctccc |
227 |
Q |
| |
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|||||| || || | |||| ||||||| |
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| T |
9865217 |
agccgcagcgaacttcggcattctccc |
9865243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 9907304 - 9907079
Alignment:
| Q |
2 |
tctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcac |
101 |
Q |
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||||||| ||||||||| | | | |||||||||||||| || ||||| ||| |||||||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
9907304 |
tctactttttttctaaccaaaacaatatttgtttaaactcaactctttccaggaatggaacaattccctgcatcacccttttactaggtggtaacctcac |
9907205 |
T |
|
| Q |
102 |
tgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaaa |
201 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
9907204 |
tgcagggttgaaatcatcaagtgtaaaaccattgacactgatcagcatcattataactaggcttttcgtactacctgttattggattgtttattgtgaaa |
9907105 |
T |
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| Q |
202 |
gccgcggctaattacggctttctccc |
227 |
Q |
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|||| ||| | || |||| ||||||| |
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| T |
9907104 |
gccgtggcgagtttcggcattctccc |
9907079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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