View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14691_low_30 (Length: 202)

Name: NF14691_low_30
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14691_low_30
NF14691_low_30
[»] chr6 (4 HSPs)
chr6 (18-188)||(32681750-32681920)
chr6 (59-166)||(1607542-1607650)
chr6 (59-130)||(4856511-4856582)
chr6 (59-130)||(11550703-11550774)
[»] chr8 (3 HSPs)
chr8 (59-166)||(23136909-23137017)
chr8 (59-166)||(45531212-45531320)
chr8 (59-161)||(45250610-45250712)
[»] chr2 (3 HSPs)
chr2 (59-167)||(16311195-16311304)
chr2 (59-166)||(41747810-41747918)
chr2 (59-161)||(24971748-24971850)
[»] chr3 (4 HSPs)
chr3 (59-166)||(37198236-37198344)
chr3 (59-161)||(50246205-50246307)
chr3 (59-166)||(20919704-20919812)
chr3 (59-166)||(20928666-20928774)
[»] chr5 (1 HSPs)
chr5 (59-143)||(9662629-9662714)
[»] chr7 (1 HSPs)
chr7 (59-160)||(7946092-7946193)
[»] scaffold0216 (1 HSPs)
scaffold0216 (59-161)||(25644-25746)
[»] scaffold0059 (2 HSPs)
scaffold0059 (59-143)||(66782-66867)
scaffold0059 (59-143)||(74887-74972)
[»] scaffold0155 (1 HSPs)
scaffold0155 (59-161)||(27064-27166)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 32681750 - 32681920
Alignment:
Q  18 tataatttttagtcaagacaatgtctaatgttttgtatttgatttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttactt 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| ||||||    
T  32681750 tataatttttagttaagacaatgtctaatgttttgtatttgatttgatatagaatcgagatgctagagtttagatatattatgttgattgcatattactt 32681849  T
Q  118 gatgaattgatatgtcaaaaactaatttaagtaaattgatttagctttttgtcttgcacaaatgttatatt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32681850 gatgaattgatatgtcaaaaactaatttaagtaaattgatttagctttttgtcttgcacaaatgttatatt 32681920  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 1607650 - 1607542
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    |||||||||| |||| || |||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  1607650 atttgatataaaatcaagatgttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 1607551  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  1607550 ttagctttt 1607542  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 4856582 - 4856511
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatat 130  Q
    ||||||||||||||| || |||||||||||| |||  |||| ||||||| || |||||| ||||||||||||    
T  4856582 atttgatatagaatcaagatgttagagtttatatatcttatgttgattgaatattacttaatgaattgatat 4856511  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 11550703 - 11550774
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatat 130  Q
    ||||||||||||||| || |||||||||||| |||  |||| ||||||| || |||||| ||||||||||||    
T  11550703 atttgatatagaatcaagatgttagagtttatatatcttatgttgattgaatattacttaatgaattgatat 11550774  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 23136909 - 23137017
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || |||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  23136909 atttgatatagaatcaagatgttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 23137008  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  23137009 ttagctttt 23137017  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 45531320 - 45531212
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || |||||||||||  |||  |||| ||||||| || |||||| |||||||||||| || |||||||||| | | |||||| ||    
T  45531320 atttgatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatttcgaaaaactaatctcaataaatttat 45531221  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  45531220 ttagctttt 45531212  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 45250712 - 45250610
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || ||||||||||||||| |||||| ||| | | |||||||||    
T  45250712 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaatgaattgatatgtcgaaaaaccaatctcaataaattgat 45250614  T
Q  158 ttag 161  Q
    ||||    
T  45250613 ttag 45250610  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 16311304 - 16311195
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || ||||||||||||||||| |||| ||||||| || |||||| || |||| ||||||| ||||| |||| | | |||||||||    
T  16311304 atttgatatagaatcaagatgttagagtttagataccttatgttgattgaatattacttaataaattaatatgtcgaaaaattaatctcaataaattgat 16311205  T
Q  158 ttagcttttt 167  Q
    ||||||||||    
T  16311204 ttagcttttt 16311195  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 41747810 - 41747918
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || ||||| |||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  41747810 atttgatatagaatcaagatgttaaagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 41747909  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  41747910 ttagctttt 41747918  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 24971850 - 24971748
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || |||||||||||||||||||||  ||||||| || ||  || ||||||||||||||| |||||||||| | | |||||||||    
T  24971850 atttgatatagaatcaagatgttagagtttagatacattaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatctcaataaattgat 24971752  T
Q  158 ttag 161  Q
    ||||    
T  24971751 ttag 24971748  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 37198236 - 37198344
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| ||  ||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  37198236 atttgatatagaatcaagaagttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 37198335  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  37198336 ttagctttt 37198344  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 50246307 - 50246205
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || |||||||||||||||||||||  ||||||| || ||  || ||||||||||||||| |||||||||| | | |||||||||    
T  50246307 atttgatatagaatcaagatgttagagtttagatacattaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatctcaataaattgat 50246209  T
Q  158 ttag 161  Q
    ||||    
T  50246208 ttag 50246205  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 20919704 - 20919812
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  20919704 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatctcaataaatttat 20919803  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  20919804 ttagctttt 20919812  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 20928666 - 20928774
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  20928666 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatctcaataaatttat 20928765  T
Q  158 ttagctttt 166  Q
    |||||||||    
T  20928766 ttagctttt 20928774  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 9662714 - 9662629
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 143  Q
    ||||||||||||||| || |||||||||||| |||| |||| ||||||| || ||| || ||||||||||||||| ||||||||||    
T  9662714 atttgatatagaatcaagatgttagagtttatataccttatgttgattgaatattatttaatgaattgatatgtcgaaaaactaat 9662629  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 7946193 - 7946092
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || ||||||||||||||| |||||||||||| | ||||| |||    
T  7946193 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatttcaataaatcgat 7946095  T
Q  158 tta 160  Q
    |||    
T  7946094 tta 7946092  T

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Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 25644 - 25746
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || || |||||||||||| |||||||||| | | |||||||||    
T  25644 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaataaattgatatgtcgaaaaactaatctcaataaattgat 25742  T
Q  158 ttag 161  Q
    ||||    
T  25743 ttag 25746  T

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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 66867 - 66782
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 143  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| ||||||||||    
T  66867 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaat 66782  T

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Target: scaffold0059; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 74972 - 74887
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 143  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| ||||||||||    
T  74972 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaat 74887  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 27064 - 27166
Alignment:
Q  59 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 157  Q
    ||||||||||||||| || || |||||||||||||| |||  ||||||| || ||  || ||||||| ||||||| |||||||||| | | |||||||||    
T  27064 atttgatatagaatcaagatgatagagtttagataccttaggttgattgaatatt-tttaatgaattaatatgtcgaaaaactaatctcaataaattgat 27162  T
Q  158 ttag 161  Q
    ||||    
T  27163 ttag 27166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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