View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_5 (Length: 488)
Name: NF14691_low_5
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 256 - 473
Target Start/End: Complemental strand, 39691248 - 39691031
Alignment:
| Q |
256 |
atggcgttcagaatcatgtgatatgcataatgcaaatggctatgacaaatgacaagttagtgactagataaaggttttgtggtgttgtggctttttggat |
355 |
Q |
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| T |
39691248 |
atggcgttcagaatcatgtgatatgcataatgcaaatggctatgacaaatgacaagttagtgactagataaaggttttgtggtgttgtggctttttggat |
39691149 |
T |
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| Q |
356 |
ggtcaaattaagtaagaagcatacaagtgtcaaataaaaattttcatttgtgtcctgtaacagtaaatcatgcatgttcctcttcacaggtggtccctac |
455 |
Q |
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| T |
39691148 |
ggtcaaattaagtaagaagcatacaagtgtcaaataaaaatttccatttgtgtcctgtaacagtaaatcatgcatgttcctcttcacaggtggtccctac |
39691049 |
T |
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| Q |
456 |
tcccttccccaccctttg |
473 |
Q |
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| T |
39691048 |
tcccttccccaccctttg |
39691031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 39691526 - 39691338
Alignment:
| Q |
19 |
gttctatcaaaaaataaatacta---tgtgaaattagcatgtgtattacgcaactaatacttgtaaacaagaaccccgattggtgcgtccagccatgcaa |
115 |
Q |
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| T |
39691526 |
gttctatcaaaaaataaatactactttgtgaaattagcatgtgtattacgcaactaataattgtaaacaagaaccccgattggtgcgtccagccattcaa |
39691427 |
T |
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| Q |
116 |
atcaaaagagctaaagaaattagctggccctcccataaccaccctttttaattctttcatgatacttaaggaatataatcattctttta |
204 |
Q |
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| T |
39691426 |
atcaaaagagctaaagaaattagctggccctcccataaccaccctttttaattctttcatgatacttaaggaatataatcactctttta |
39691338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 39691307 - 39691266
Alignment:
| Q |
218 |
gttaagtgcaatttgatcatttactagtgaattaaataatgg |
259 |
Q |
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| T |
39691307 |
gttaagtgcaatttgatcatttattagtgaattaaataatgg |
39691266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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